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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:101.8 nTPM
HPA:101.8 nTPM
GTEx:274.2 nTPM
FANTOM5:225.6 Scaled Tags Per Million
Pig:2.5 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 101.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 82.5
1981 Female, age 72, midline 96.4
2816 Male, age 47, midline 95.4
2194 Female, age 79, both hemispheres 93.2
2048 Male, age 55, midline 66.7
2565 Male, age 75, midline 60.6
Cervical spinal cord, dorsal horn
nTPM: 91.8
2296 Male, age 66, both hemispheres 158.3
2173 Female, age 72, unknown 146.8
2069 Male, age 47, both hemispheres 78.1
1877 Male, age 55, unknown 76.7
2721 Male, age 90, both hemispheres 46.5
2297 Male, age 75, both hemispheres 44.5
Cervical spinal cord, ventral horn
nTPM: 101.8
2820 Female, age 79, both hemispheres 129.9
2068 Male, age 55, unknown 122.2
2809 Male, age 90, both hemispheres 97.0
2480 Male, age 75, both hemispheres 88.7
2295 Male, age 66, both hemispheres 86.4
2098 Female, age 72, unknown 86.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 274.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 274.2
Samples: 159

Max nTPM: 584.1
Min nTPM: 23.0
Std nTPM: 125.3
Median nTPM: 254.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 584.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 568.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 561.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 545.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 534.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 511.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 508.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 508.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 505.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 488.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 486.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 483.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 470.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 460.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 450.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 447.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 443.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 429.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 428.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 427.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 418.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 416.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 416.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 413.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 412.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 410.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 407.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 406.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 406.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 402.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 402.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 387.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 383.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 381.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 380.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 378.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 372.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 370.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 370.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 359.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 359.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 357.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 354.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 353.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 352.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 351.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 347.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 346.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 337.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 335.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 334.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 332.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 327.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 322.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 321.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 318.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 318.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 316.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 316.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 312.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 310.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 303.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 301.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 298.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 296.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 293.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 293.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 288.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 287.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 284.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 271.4
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 271.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 270.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 269.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 266.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 265.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 262.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 262.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 255.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 254.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 252.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 252.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 250.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 250.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 249.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 247.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 246.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 246.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 245.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 244.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 243.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 235.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 233.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 232.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 231.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 231.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 223.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 223.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 220.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 217.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 215.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 213.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 212.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 212.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 211.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 210.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 210.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 207.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 206.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 202.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 197.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 196.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 194.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 193.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 188.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 187.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 186.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 183.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 179.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 177.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 175.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 171.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 167.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 164.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 164.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 163.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 163.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 162.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 161.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 159.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 159.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 157.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 154.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 152.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 142.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 140.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 140.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 139.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 138.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 137.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 132.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 128.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 127.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 125.7
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 124.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 120.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 118.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 100.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 92.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 90.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 87.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 72.9
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 72.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 63.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 50.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 43.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 41.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 27.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 23.0
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 225.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 225.6
FF:10181-103D1 60 years, female 328.9
FF:10159-103A6 76 years, female 122.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 2.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 2.6
Samples: 4

Max nTPM: 5.3
Min nTPM: 0.3
Sample A Female 0.3
Sample B Female 2.9
Sample C Male 5.3
Sample D Male 1.7
Ventral spinal cord
nTPM: 0.5
Samples: 4

Max nTPM: 1.3
Min nTPM: 0.1
Sample A Female 0.1
Sample B Female 0.2
Sample C Male 1.3
Sample D Male 0.2

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