MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:38.8 nTPM
HPA:38.8 nTPM
GTEx:34.6 nTPM
FANTOM5:55.4 Scaled Tags Per Million
Pig:17.3 nTPM
Mouse:46.2 nTPM
Allen mouse:2.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 38.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 35.5
2411 Female, age 72, unknown 43.8
1830 Male, age 51, unknown 40.5
1870 Female, age 42, unknown 40.4
1833 Male, age 53, unknown 40.3
2828 Female, age 72, unknown 37.3
2586 Male, age 75, left hemisphere 36.7
1827 Male, age 72, unknown 33.9
2666 Male, age 74, left hemisphere 30.0
2219 Male, age 76, both hemispheres 26.7
2019 Male, age 18, unknown 25.5
Dorsal raphe nucleus
nTPM: 38.8
2750 Male, age 76, both hemispheres 50.7
2047 Male, age 72, unknown 44.7
1828 Male, age 53, unknown 36.2
2298 Female, age 72, unknown 34.2
2016 Female, age 72, unknown 28.4
Inferior colliculus
nTPM: 28.2
2849 Male, age 72, unknown 32.1
1848 Female, age 42, unknown 31.2
1890 Male, age 53, unknown 27.0
2097 Female, age 72, unknown 22.6
Median raphe nucleus
nTPM: 38.0
2220 Male, age 76, midline 38.0
Pedunculopontine tegmental nucleus
nTPM: 34.7
2334 Male, age 80, both hemispheres 42.9
1921 Female, age 85, both hemispheres 36.0
2338 Male, age 61, both hemispheres 25.2
Periaquaductal grey, anterior
nTPM: 34.8
1947 Male, age 18, unknown 37.4
2502 Female, age 75, unknown 36.0
1795 Male, age 51, unknown 31.1
Periaquaductal grey, dorsal
nTPM: 27.4
2464 Female, age 72, unknown 29.5
1831 Male, age 72, unknown 29.3
2850 Male, age 76, both hemispheres 26.1
1840 Male, age 53, unknown 24.6
Periaquaductal grey, lateral
nTPM: 30.1
2053 Male, age 18, unknown 36.5
2272 Male, age 74, both hemispheres 30.0
2140 Male, age 76, both hemispheres 23.7
Pretectal area
nTPM: 31.6
2825 Male, age 18, unknown 39.3
2667 Female, age 75, unknown 37.4
2316 Male, age 76, right hemisphere 35.1
1817 Female, age 42, unknown 32.3
1815 Male, age 53, unknown 32.0
2224 Female, age 72, unknown 31.5
2407 Male, age 75, both hemispheres 29.8
2007 Male, age 72, unknown 29.3
2273 Male, age 74, both hemispheres 28.4
1816 Male, age 51, unknown 27.0
1944 Female, age 72, unknown 25.6
Red nucleus
nTPM: 37.4
2823 Male, age 76, right hemisphere 48.6
1865 Male, age 51, unknown 42.7
1821 Female, age 72, unknown 41.5
1904 Male, age 53, unknown 39.5
2588 Male, age 74, left hemisphere 38.5
2503 Female, age 72, unknown 37.0
2725 Female, age 75, unknown 36.4
2227 Male, age 72, unknown 35.2
2769 Male, age 72, unknown 35.2
1954 Female, age 42, unknown 34.5
2785 Male, age 18, unknown 30.3
2584 Male, age 75, left hemisphere 29.2
Substantia nigra
nTPM: 28.7
1916 Female, age 42, unknown 39.8
1941 Male, age 53, unknown 32.2
1889 Female, age 72, unknown 30.8
2699 Male, age 18, unknown 30.8
1851 Male, age 51, unknown 30.2
2583 Male, age 75, right hemisphere 28.7
2590 Female, age 75, unknown 25.4
2241 Male, age 72, unknown 23.6
2665 Male, age 74, both hemispheres 22.8
2409 Female, age 72, unknown 22.7
Superior colliculus
nTPM: 33.2
1895 Male, age 76, right hemisphere 42.5
1839 Male, age 51, unknown 35.9
2587 Male, age 74, left hemisphere 35.7
2664 Male, age 75, both hemispheres 33.6
1913 Female, age 42, unknown 33.4
1995 Male, age 72, unknown 33.2
1796 Male, age 53, unknown 30.9
2261 Male, age 18, unknown 30.4
2668 Female, age 75, unknown 30.1
2087 Female, age 72, unknown 26.3
Ventral tegmental area
nTPM: 35.7
2223 Female, age 72, unknown 47.3
2410 Female, age 72, unknown 37.9
2218 Male, age 76, both hemispheres 34.9
1915 Female, age 42, unknown 33.2
2021 Male, age 53, unknown 31.6
1942 Male, age 51, unknown 29.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 34.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 34.6
Samples: 139

Max nTPM: 127.8
Min nTPM: 13.5
Std nTPM: 14.9
Median nTPM: 31.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 127.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 82.7
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 76.9
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 65.5
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 65.3
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 58.8
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 58.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 58.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 56.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 56.3
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 55.3
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 55.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 55.4
FF:10158-103A5 76 years, female 55.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 17.3
Pig sample Sample description nTPM
Midbrain
nTPM: 17.3
Samples: 4

Max nTPM: 38.7
Min nTPM: 8.5
Sample A Female 38.7
Sample B Female 12.5
Sample C Male 9.3
Sample D Male 8.5
Periaqueductal gray
nTPM: 12.3
Samples: 3

Max nTPM: 12.5
Min nTPM: 12.0
Sample B Female 12.0
Sample C Male 12.5
Sample D Male 12.5
Substantia nigra
nTPM: 14.1
Samples: 4

Max nTPM: 15.8
Min nTPM: 10.8
Sample A Female 15.8
Sample B Female 10.8
Sample C Male 14.7
Sample D Male 14.9
Superior colliculi
nTPM: 10.9
Samples: 4

Max nTPM: 13.2
Min nTPM: 8.8
Sample A Female 8.8
Sample B Female 12.8
Sample C Male 8.9
Sample D Male 13.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 46.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 46.3
Samples: 4

Max nTPM: 49.1
Min nTPM: 44.2
Sample A Male 46.6
Sample B Male 45.1
Sample C Female 44.2
Sample D Female 49.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.1
633278 Antisense, RP_040907_02_D03, Mouse strain C57BL/6J (56 days, male) 2.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.