HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
Mouse brain, Intensity
Hippocampal formationi 		35.814
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:190.2 nTPM
HPA:190.2 nTPM
GTEx:260.8 nTPM
FANTOM5:443.9 Scaled Tags Per Million
Pig:10.5 nTPM
Mouse:9.8 nTPM
Allen mouse:2.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA014404Antibody CAB001452Antibody CAB040581Antibody CAB080022
Glial cells Not detectedNot detectedMediumNot detected
Neuronal cells HighLowMediumMedium








HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA014404
Hippocampal formation mean intensity 35.814
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 27.373
Molecular layer of the dentate gyrus 25.850
Granular dentate gyrus 26.804
CA1 - oriens layer 11.573
CA1 - pyramidal layer 33.504
CA1 - radiatum layer 19.107
CA2 - oriens layer 27.895
CA2 - pyramidal layer 35.814
CA2 - radiatum layer 18.442
CA3 - oriens layer 19.128
CA3 - pyramidal layer 25.913
CA3 - radiatum layer 15.817
Stratum lucidum 20.528
Lacunosum moleculare 15.722
Subiculum 28.017

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 190.2
Sample id Sample description nTPM
Hippocampus
nTPM: 130.5
1898 Male, age 80, left hemisphere 167.1
2621 Female, age 67, right hemisphere 155.2
2529 Female, age 94, left hemisphere 141.2
1855 Male, age 76, left hemisphere 128.4
2148 Female, age 91, left hemisphere 118.2
1911 Female, age 85, right hemisphere 72.8
Dentate gyrus
nTPM: 122.6
2246 Female, age 85, both hemispheres 165.5
2530 Female, age 94, left hemisphere 157.5
1927 Female, age 91, both hemispheres 114.9
2528 Male, age 74, both hemispheres 114.2
2010 Male, age 76, both hemispheres 109.7
2531 Female, age 67, both hemispheres 73.7
Entorhinal gyrus
nTPM: 148.9
2613 Female, age 94, left hemisphere 190.4
2764 Male, age 80, right hemisphere 169.2
1938 Female, age 85, left hemisphere 167.1
1787 Male, age 76, left hemisphere 157.0
2686 Male, age 75, right hemisphere 123.1
2117 Female, age 91, right hemisphere 86.5
Hippocampus, CA1
nTPM: 122.5
2527 Male, age 74, both hemispheres 158.7
2082 Female, age 91, right hemisphere 145.5
1873 Female, age 85, both hemispheres 116.5
2749 Male, age 80, left hemisphere 116.4
2045 Male, age 76, both hemispheres 75.5
Hippocampus, CA2
nTPM: 140.6
2437 Female, age 94, left hemisphere 167.6
1940 Female, age 85, left hemisphere 156.2
1892 Male, age 76, both hemispheres 153.9
2249 Male, age 74, both hemispheres 129.1
2113 Female, age 91, right hemisphere 122.8
1963 Male, age 80, left hemisphere 114.1
Hippocampus, CA3
nTPM: 103.6
2861 Female, age 67, both hemispheres 144.1
1867 Male, age 76, both hemispheres 119.8
1891 Female, age 85, both hemispheres 107.9
2436 Male, age 74, both hemispheres 107.8
2620 Female, age 94, left hemisphere 76.2
2137 Male, age 80, left hemisphere 65.8
Parahippocampal cortex
nTPM: 162.6
2250 Female, age 67, right hemisphere 207.2
2245 Female, age 91, both hemispheres 195.6
1933 Female, age 85, both hemispheres 186.7
1990 Female, age 91, right hemisphere 179.0
2622 Female, age 67, right hemisphere 172.4
1850 Male, age 80, both hemispheres 163.8
2692 Male, age 74, both hemispheres 163.1
2693 Female, age 94, both hemispheres 130.7
2532 Female, age 72, left hemisphere 119.6
2018 Male, age 76, both hemispheres 107.5
Perirhinal gyrus
nTPM: 190.2
1847 Female, age 91, left hemisphere 321.4
2521 Female, age 94, right hemisphere 177.4
1794 Male, age 80, right hemisphere 176.1
1841 Female, age 85, right hemisphere 160.9
2848 Male, age 76, right hemisphere 115.5
Subiculum
nTPM: 128.9
2619 Male, age 74, both hemispheres 179.0
2438 Female, age 94, left hemisphere 175.8
1977 Female, age 85, both hemispheres 147.3
1901 Male, age 80, both hemispheres 114.1
2729 Female, age 91, right hemisphere 85.6
2042 Male, age 76, both hemispheres 71.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 260.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 260.8
Samples: 197

Max nTPM: 902.1
Min nTPM: 25.7
Std nTPM: 177.2
Median nTPM: 212.5
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 902.1
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 820.3
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 782.6
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 778.4
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 760.5
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 668.9
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 663.9
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 663.2
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 654.5
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 626.6
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 610.8
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 443.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 443.9
FF:10169-103B7 60 years, female 607.9
FF:10153-102I9 76 years, female 279.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 10.5
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 6.2
Samples: 4

Max nTPM: 7.3
Min nTPM: 4.1
Sample A Female 7.3
Sample B Female 6.2
Sample C Male 7.3
Sample D Male 4.1
Entorhinal cortex
nTPM: 5.5
Samples: 4

Max nTPM: 6.1
Min nTPM: 4.2
Sample A Female 6.0
Sample B Female 5.7
Sample C Male 6.1
Sample D Male 4.2
Subiculum
nTPM: 10.5
Samples: 4

Max nTPM: 12.6
Min nTPM: 7.9
Sample A Female 9.8
Sample B Female 7.9
Sample C Male 12.6
Sample D Male 11.8
Ventral hippocampus
nTPM: 10.2
Samples: 4

Max nTPM: 16.0
Min nTPM: 6.5
Sample A Female 11.6
Sample B Female 6.5
Sample C Male 16.0
Sample D Male 6.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 9.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 6.1
Samples: 4

Max nTPM: 7.5
Min nTPM: 4.7
Sample A Male 5.6
Sample B Male 4.7
Sample C Female 7.5
Sample D Female 6.7
Hippocampal formation
nTPM: 9.8
Samples: 4

Max nTPM: 11.2
Min nTPM: 8.0
Sample A Male 10.3
Sample B Male 8.0
Sample C Female 9.8
Sample D Female 11.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.9
68545693 Antisense, RP_050120_01_D05, Mouse strain C57BL/6J (56 days, male) 5.2
72081426 Antisense, RP_051017_01_C05, Mouse strain C57BL/6J (56 days, male) 0.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.