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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Mouse brain, Intensity
Ponsi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

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210.375
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:357.8 nTPM
HPA:357.8 nTPM
FANTOM5:989.9 Scaled Tags Per Million
Pig:35.1 nTPM
Allen mouse:5.0 Expression energy

PONS - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

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, antibody HPA014404
Pons mean intensity 210.375
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

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FRONT BACK
Barrington's nucleus -
Koelliker-fuse nucleus -
Motor tregiminal nucleus 72.339
Parabrachial nucleus 108.137
Principle sensory trigeminal nucleus 51.617
Locus coeruleus 201.689
Pontine nucleus 12.174
Vestibular nucleus 44.805
Pontine reticular nucleus, oral 14.300
Lateral lemniscus 50.044
Superior paraolivary nucleus 13.813

PONS - HPA Brain RNA-seq
Max nTPM 357.8
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 181.2
2301 Female, age 85, both hemispheres 193.5
1984 Male, age 76, both hemispheres 188.4
2188 Female, age 91, both hemispheres 182.8
2090 Male, age 80, both hemispheres 160.2
Dorsal cochlear nucleus
nTPM: 188.5
2058 Male, age 76, both hemispheres 221.5
2187 Female, age 91, both hemispheres 206.5
2370 Male, age 61, both hemispheres 194.9
2802 Male, age 74, right hemisphere 173.2
2378 Male, age 80, both hemispheres 146.2
Dorsal tegmental nucleus
nTPM: 192.9
2083 Male, age 80, both hemispheres 258.5
2358 Male, age 61, both hemispheres 181.9
1936 Male, age 76, left hemisphere 180.9
2326 Male, age 74, both hemispheres 150.3
Dorsolateral tegmental area
nTPM: 178.2
2654 Male, age 80, both hemispheres 239.7
2141 Male, age 76, both hemispheres 207.7
2751 Female, age 85, both hemispheres 198.6
2360 Male, age 74, both hemispheres 147.2
2337 Male, age 61, both hemispheres 97.8
Kolliker-Fuse nucleus
nTPM: 258.0
2163 Male, age 80, both hemispheres 375.1
2793 Female, age 91, left hemisphere 257.0
2315 Male, age 76, right hemisphere 142.0
Lateral lemniscal nuclei
nTPM: 297.8
2169 Male, age 76, both hemispheres 402.3
2453 Male, age 74, right hemisphere 373.3
2746 Female, age 85, left hemisphere 283.4
2036 Male, age 80, both hemispheres 232.5
2320 Female, age 91, left hemisphere 197.3
Lateral parabrachial nucleus
nTPM: 208.2
2139 Female, age 85, right hemisphere 309.8
2013 Male, age 80, both hemispheres 208.5
2790 Male, age 61, both hemispheres 198.2
2792 Male, age 76, both hemispheres 116.3
Lateral vestibular nucleus
nTPM: 268.5
2184 Male, age 76, both hemispheres 331.7
2311 Male, age 80, both hemispheres 205.3
Locus coeruleus
nTPM: 357.8
2720 Male, age 74, both hemispheres 589.9
2123 Female, age 91, both hemispheres 539.2
2014 Male, age 55, unknown 293.9
1980 Male, age 76, both hemispheres 290.3
2162 Male, age 80, both hemispheres 276.5
2317 Female, age 72, unknown 275.8
2788 Male, age 74, unknown 238.8
Medial olivary nucleus
nTPM: 102.0
2851 Male, age 80, both hemispheres 167.4
1962 Male, age 76, both hemispheres 110.2
2138 Female, age 91, both hemispheres 69.5
1943 Male, age 61, both hemispheres 61.0
Medial parabrachial nucleus
nTPM: 232.8
2854 Male, age 80, both hemispheres 297.8
2156 Male, age 61, both hemispheres 262.1
2170 Female, age 91, both hemispheres 231.6
2786 Male, age 76, both hemispheres 210.8
2463 Female, age 85, right hemisphere 161.7
Medial periolivary nuclei
nTPM: 278.1
2171 Female, age 85, both hemispheres 430.5
2063 Male, age 76, both hemispheres 355.3
2791 Male, age 74, right hemisphere 243.0
2458 Female, age 91, both hemispheres 192.2
2081 Male, age 80, both hemispheres 169.5
Motor facial nucleus
nTPM: 314.4
2062 Male, age 76, both hemispheres 416.8
2365 Male, age 74, right hemisphere 362.1
2697 Female, age 85, both hemispheres 351.2
2327 Male, age 80, both hemispheres 325.5
2126 Male, age 61, both hemispheres 218.2
2795 Female, age 91, both hemispheres 212.9
Motor trigeminal nucleus
nTPM: 252.8
2079 Male, age 80, both hemispheres 324.4
2560 Male, age 74, both hemispheres 253.2
2309 Male, age 76, both hemispheres 251.9
2335 Male, age 61, both hemispheres 249.4
2321 Female, age 91, both hemispheres 185.3
Nuclei of the trapezoid body
nTPM: 344.9
2159 Male, age 61, both hemispheres 488.0
2735 Female, age 85, both hemispheres 391.3
1983 Male, age 76, both hemispheres 381.8
2166 Male, age 80, both hemispheres 269.7
2368 Female, age 91, both hemispheres 193.7
Paramedian reticular nucleus
nTPM: 312.2
2313 Male, age 61, both hemispheres 378.2
2050 Female, age 85, both hemispheres 344.6
2057 Male, age 80, both hemispheres 343.2
2052 Male, age 76, both hemispheres 183.0
Pontine nuclei
nTPM: 309.5
2787 Female, age 85, both hemispheres 505.7
2727 Male, age 61, right hemisphere 436.7
1968 Male, age 76, left hemisphere 341.3
1863 Male, age 55, unknown 295.3
2109 Female, age 72, unknown 275.4
2454 Male, age 74, left hemisphere 232.0
2115 Male, age 80, left hemisphere 221.1
2319 Female, age 91, both hemispheres 168.8
Pontine raphe nucleus
nTPM: 313.9
2122 Female, age 85, midline 342.8
2853 Male, age 76, midline 284.9
Posteroventral cochlear nucleus
nTPM: 182.5
2752 Female, age 85, both hemispheres 286.3
2070 Male, age 76, both hemispheres 267.0
2371 Male, age 61, both hemispheres 162.0
2341 Male, age 80, both hemispheres 107.1
2135 Female, age 91, both hemispheres 89.9
Principal sensory trigeminal nucleus
nTPM: 327.7
2158 Male, age 61, both hemispheres 487.1
2008 Male, age 80, left hemisphere 321.1
2324 Male, age 76, both hemispheres 302.4
2367 Female, age 91, left hemisphere 200.1
Reticular pontine nucleus, caudal
nTPM: 256.2
2332 Male, age 80, right hemisphere 341.6
2092 Male, age 76, both hemispheres 290.6
2457 Female, age 91, both hemispheres 200.5
2559 Male, age 74, both hemispheres 192.2
Reticular pontine nucleus, oral
nTPM: 242.8
2361 Male, age 74, both hemispheres 275.5
2012 Female, age 85, both hemispheres 273.9
1939 Male, age 80, both hemispheres 253.2
2167 Male, age 76, both hemispheres 229.4
2366 Female, age 91, both hemispheres 181.8
Reticulotegmental nucleus
nTPM: 259.3
2325 Male, age 76, both hemispheres 313.6
2322 Female, age 91, both hemispheres 243.0
2452 Male, age 74, both hemispheres 240.9
2333 Male, age 80, both hemispheres 239.4
Spinal trigeminal nucleus, oral
nTPM: 266.1
2164 Male, age 80, both hemispheres 322.1
2737 Female, age 85, both hemispheres 270.0
1978 Male, age 76, both hemispheres 206.2
Subcoeruleus area
nTPM: 265.0
2323 Female, age 91, left hemisphere 383.0
1958 Male, age 80, both hemispheres 314.3
2089 Male, age 76, left hemisphere 248.5
2451 Male, age 74, both hemispheres 225.0
2369 Female, age 85, left hemisphere 154.2
Superior olive
nTPM: 273.6
1875 Female, age 85, both hemispheres 346.5
2020 Male, age 76, both hemispheres 264.9
2329 Male, age 80, right hemisphere 262.6
2364 Male, age 74, right hemisphere 253.9
2561 Female, age 91, both hemispheres 240.3
Superior vestibular nucleus
nTPM: 192.7
2015 Male, age 80, both hemispheres 242.3
2061 Male, age 76, both hemispheres 205.4
2383 Male, age 74, both hemispheres 130.5
Ventral periolivary nuclei
nTPM: 321.9
2165 Male, age 80, both hemispheres 398.1
2130 Female, age 85, both hemispheres 396.4
2794 Female, age 91, left hemisphere 271.0
2023 Male, age 76, both hemispheres 222.0
Ventrolateral tegmental area, A5 NE cell group
nTPM: 262.6
2449 Male, age 74, both hemispheres 389.4
2840 Female, age 85, both hemispheres 303.0
1959 Male, age 76, both hemispheres 293.7
2161 Male, age 80, both hemispheres 229.0
2359 Male, age 61, both hemispheres 209.9
2456 Female, age 91, both hemispheres 150.3

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 989.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 989.9
FF:10182-103D2 60 years, female 1462.5
FF:10165-103B3 76 years, female 517.4
Pons
Scaled Tags Per Million: 890.9
FF:10033-101E6 18-54 years, mixed 890.9

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 35.1
Pig sample Sample description nTPM
Pons
nTPM: 35.1
Samples: 4

Max nTPM: 59.4
Min nTPM: 10.0
Sample A Female 10.0
Sample B Female 32.0
Sample C Male 59.4
Sample D Male 39.0

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

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Max Expression energy 5.0
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 5.0
72081426 Antisense, RP_051017_01_C05, Mouse strain C57BL/6J (56 days, male) 5.3
68545693 Antisense, RP_050120_01_D05, Mouse strain C57BL/6J (56 days, male) 4.7

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.