BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:11.6 nTPM
HPA:11.6 nTPM
GTEx:10.5 nTPM
FANTOM5:121.3 Scaled Tags Per Million

CAUDATE - Antibody stainingi
Antibody HPA059930
Glial cells Not detected
Neuronal cells Low


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 11.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 10.3
2288 Male, age 75, left hemisphere 11.5
2290 Female, age 72, unknown 10.6
2846 Female, age 79, unknown 10.5
2481 Female, age 94, left hemisphere 10.4
1854 Male, age 80, left hemisphere 10.3
1781 Male, age 74, unknown 10.1
1857 Female, age 85, left hemisphere 9.7
2289 Male, age 61, right hemisphere 9.6
Claustrum
nTPM: 10.4
2491 Male, age 75, both hemispheres 11.0
2392 Female, age 94, both hemispheres 10.9
2568 Male, age 61, both hemispheres 10.6
2645 Female, age 72, unknown 10.5
2198 Male, age 80, both hemispheres 10.4
2284 Female, age 91, both hemispheres 10.4
1956 Male, age 74, unknown 10.2
2196 Female, age 79, unknown 9.9
2292 Female, age 85, both hemispheres 9.4
Globus pallidus, externus
nTPM: 11.0
2772 Female, age 79, unknown 11.6
2567 Female, age 72, unknown 11.4
2395 Male, age 75, both hemispheres 11.3
2646 Male, age 61, right hemisphere 10.4
1996 Male, age 80, right hemisphere 10.3
Globus pallidus, internus
nTPM: 10.7
2483 Female, age 94, right hemisphere 12.4
2287 Male, age 75, right hemisphere 11.5
1818 Male, age 74, unknown 10.8
2037 Male, age 80, right hemisphere 10.8
2566 Female, age 72, unknown 10.1
2778 Female, age 91, both hemispheres 9.9
2111 Female, age 85, right hemisphere 9.3
Nucleus accumbens
nTPM: 10.6
1856 Female, age 91, right hemisphere 11.2
2824 Male, age 61, right hemisphere 11.0
2286 Male, age 75, left hemisphere 10.9
1783 Male, age 74, unknown 10.6
1806 Female, age 85, left hemisphere 10.4
2391 Female, age 94, left hemisphere 10.3
2698 Female, age 72, unknown 10.1
2732 Male, age 80, right hemisphere 10.1
Nucleus basalis of Meynert
nTPM: 10.8
2821 Male, age 75, both hemispheres 11.1
2484 Female, age 94, left hemisphere 10.8
2569 Male, age 61, both hemispheres 10.8
2393 Male, age 80, right hemisphere 10.5
Nucleus of the diagonal band
nTPM: 11.6
2775 Male, age 80, right hemisphere 12.3
1979 Male, age 74, unknown 11.6
1812 Female, age 91, both hemispheres 11.5
2195 Female, age 85, both hemispheres 11.5
2029 Male, age 61, right hemisphere 11.4
Olfactory tubercle
nTPM: 11.0
1998 Female, age 91, both hemispheres 11.5
2487 Female, age 94, left hemisphere 11.0
1846 Male, age 80, right hemisphere 10.9
2856 Male, age 75, right hemisphere 10.6
Putamen
nTPM: 10.6
2647 Male, age 75, left hemisphere 11.3
2466 Female, age 79, unknown 10.9
2482 Female, age 94, left hemisphere 10.7
1838 Male, age 80, right hemisphere 10.6
1937 Female, age 91, right hemisphere 10.6
1829 Male, age 74, unknown 10.4
2489 Female, age 72, unknown 10.1
Septal nuclei
nTPM: 11.2
1960 Male, age 74, unknown 12.4
2031 Female, age 72, unknown 11.6
2009 Female, age 91, both hemispheres 11.1
2059 Female, age 85, both hemispheres 11.0
2394 Male, age 61, left hemisphere 10.9
2629 Female, age 94, right hemisphere 10.6
2199 Male, age 80, right hemisphere 10.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 10.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 9.1
Samples: 246

Max nTPM: 21.4
Min nTPM: 4.5
Std nTPM: 2.3
Median nTPM: 8.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 21.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 19.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 17.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 15.8
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 15.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 15.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 15.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 15.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 15.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 14.5
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 14.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 10.5
Samples: 246

Max nTPM: 20.4
Min nTPM: 3.1
Std nTPM: 2.3
Median nTPM: 10.4
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 20.4
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 19.9
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 17.6
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 17.1
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 15.6
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 15.3
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 15.2
GTEX-13NYB-0011-R6b-SM-5MR51 40-49 years, male 15.1
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 15.1
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 14.8
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 14.7
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Brain - Putamen (basal ganglia)
Average nTPM: 10.2
Samples: 205

Max nTPM: 27.3
Min nTPM: 4.3
Std nTPM: 2.8
Median nTPM: 9.9
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 27.3
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 21.3
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 19.1
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 16.9
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 16.5
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 16.1
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 16.1
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 16.0
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 15.9
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 15.3
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 15.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 121.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 98.2
FF:10164-103B2 76 years, female 98.2
Globus pallidus
Scaled Tags Per Million: 77.6
FF:10161-103A8 76 years, female 89.0
FF:10175-103C4 60 years, female 66.3
Nucleus accumbens
Scaled Tags Per Million: 73.8
FF:10037-101F1 23-56 years, mixed 73.8
Putamen
Scaled Tags Per Million: 121.3
FF:10176-103C5 60 years, female 121.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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