MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:199.6 nTPM
HPA:199.6 nTPM
GTEx:136.4 nTPM
FANTOM5:118.1 Scaled Tags Per Million
Pig:135.5 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 199.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 184.6
2219 Male, age 76, both hemispheres 194.5
1870 Female, age 42, unknown 189.7
2666 Male, age 74, left hemisphere 185.9
2019 Male, age 18, unknown 185.4
1827 Male, age 72, unknown 184.9
2411 Female, age 72, unknown 184.1
1830 Male, age 51, unknown 183.6
1833 Male, age 53, unknown 182.6
2828 Female, age 72, unknown 181.0
2586 Male, age 75, left hemisphere 173.9
Dorsal raphe nucleus
nTPM: 178.6
1828 Male, age 53, unknown 186.3
2750 Male, age 76, both hemispheres 182.3
2047 Male, age 72, unknown 177.8
2298 Female, age 72, unknown 175.0
2016 Female, age 72, unknown 171.5
Inferior colliculus
nTPM: 181.8
2849 Male, age 72, unknown 193.6
1890 Male, age 53, unknown 182.7
1848 Female, age 42, unknown 177.1
2097 Female, age 72, unknown 173.8
Median raphe nucleus
nTPM: 199.6
2220 Male, age 76, midline 199.6
Pedunculopontine tegmental nucleus
nTPM: 196.0
2338 Male, age 61, both hemispheres 205.4
2334 Male, age 80, both hemispheres 197.4
1921 Female, age 85, both hemispheres 185.0
Periaquaductal grey, anterior
nTPM: 182.5
1795 Male, age 51, unknown 184.8
1947 Male, age 18, unknown 182.0
2502 Female, age 75, unknown 180.8
Periaquaductal grey, dorsal
nTPM: 182.2
2850 Male, age 76, both hemispheres 193.2
1831 Male, age 72, unknown 179.6
2464 Female, age 72, unknown 178.8
1840 Male, age 53, unknown 177.0
Periaquaductal grey, lateral
nTPM: 179.1
2272 Male, age 74, both hemispheres 181.5
2140 Male, age 76, both hemispheres 180.1
2053 Male, age 18, unknown 175.8
Pretectal area
nTPM: 186.4
1944 Female, age 72, unknown 197.7
1817 Female, age 42, unknown 193.7
2007 Male, age 72, unknown 192.5
1816 Male, age 51, unknown 191.4
2667 Female, age 75, unknown 188.6
1815 Male, age 53, unknown 187.9
2273 Male, age 74, both hemispheres 183.1
2407 Male, age 75, both hemispheres 182.8
2224 Female, age 72, unknown 181.8
2825 Male, age 18, unknown 179.5
2316 Male, age 76, right hemisphere 171.6
Red nucleus
nTPM: 186.8
2725 Female, age 75, unknown 202.2
2503 Female, age 72, unknown 190.7
2785 Male, age 18, unknown 190.4
1865 Male, age 51, unknown 188.2
1954 Female, age 42, unknown 188.1
2823 Male, age 76, right hemisphere 185.7
2227 Male, age 72, unknown 185.0
1821 Female, age 72, unknown 184.0
1904 Male, age 53, unknown 182.8
2588 Male, age 74, left hemisphere 182.2
2769 Male, age 72, unknown 181.2
2584 Male, age 75, left hemisphere 181.1
Substantia nigra
nTPM: 190.2
1916 Female, age 42, unknown 211.3
2409 Female, age 72, unknown 197.4
2699 Male, age 18, unknown 196.6
1941 Male, age 53, unknown 194.8
1889 Female, age 72, unknown 190.3
2665 Male, age 74, both hemispheres 189.8
1851 Male, age 51, unknown 188.4
2241 Male, age 72, unknown 179.8
2583 Male, age 75, right hemisphere 178.0
2590 Female, age 75, unknown 175.9
Superior colliculus
nTPM: 181.1
1913 Female, age 42, unknown 185.1
2087 Female, age 72, unknown 184.0
1796 Male, age 53, unknown 183.4
2587 Male, age 74, left hemisphere 183.4
2668 Female, age 75, unknown 181.7
2261 Male, age 18, unknown 181.0
1995 Male, age 72, unknown 180.9
1895 Male, age 76, right hemisphere 178.9
1839 Male, age 51, unknown 177.5
2664 Male, age 75, both hemispheres 175.3
Ventral tegmental area
nTPM: 188.9
2218 Male, age 76, both hemispheres 199.9
1915 Female, age 42, unknown 192.3
2410 Female, age 72, unknown 191.5
2223 Female, age 72, unknown 186.6
1942 Male, age 51, unknown 184.0
2021 Male, age 53, unknown 178.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 136.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 136.4
Samples: 139

Max nTPM: 330.7
Min nTPM: 33.1
Std nTPM: 38.6
Median nTPM: 129.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 330.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 235.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 233.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 219.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 217.9
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 202.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 201.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 196.6
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 194.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 194.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 191.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 118.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 118.1
FF:10158-103A5 76 years, female 118.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 135.5
Pig sample Sample description nTPM
Midbrain
nTPM: 133.4
Samples: 4

Max nTPM: 154.8
Min nTPM: 112.4
Sample A Female 134.4
Sample B Female 154.8
Sample C Male 131.9
Sample D Male 112.4
Periaqueductal gray
nTPM: 135.5
Samples: 3

Max nTPM: 155.2
Min nTPM: 107.0
Sample B Female 144.4
Sample C Male 155.2
Sample D Male 107.0
Substantia nigra
nTPM: 127.0
Samples: 4

Max nTPM: 162.3
Min nTPM: 83.3
Sample A Female 162.3
Sample B Female 102.7
Sample C Male 159.7
Sample D Male 83.3
Superior colliculi
nTPM: 128.9
Samples: 4

Max nTPM: 161.9
Min nTPM: 79.2
Sample A Female 161.9
Sample B Female 79.2
Sample C Male 141.0
Sample D Male 133.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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