BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:0.3 nTPM
HPA:0.3 nTPM
GTEx:0.2 nTPM
FANTOM5:0.2 Scaled Tags Per Million
Pig:2.5 nTPM
Mouse:0.0 nTPM
Allen mouse:0.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA034579Antibody HPA034580
Glial cells MediumLow
Neuronal cells MediumHigh





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 0.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.2
2289 Male, age 61, right hemisphere 0.4
1781 Male, age 74, unknown 0.2
1854 Male, age 80, left hemisphere 0.2
1857 Female, age 85, left hemisphere 0.2
2290 Female, age 72, unknown 0.2
2481 Female, age 94, left hemisphere 0.2
2846 Female, age 79, unknown 0.2
2288 Male, age 75, left hemisphere 0.1
Claustrum
nTPM: 0.2
2196 Female, age 79, unknown 0.2
2198 Male, age 80, both hemispheres 0.2
2568 Male, age 61, both hemispheres 0.2
2645 Female, age 72, unknown 0.2
1956 Male, age 74, unknown 0.1
2284 Female, age 91, both hemispheres 0.1
2292 Female, age 85, both hemispheres 0.1
2392 Female, age 94, both hemispheres 0.1
2491 Male, age 75, both hemispheres 0.1
Globus pallidus, externus
nTPM: 0.2
2567 Female, age 72, unknown 0.3
2646 Male, age 61, right hemisphere 0.3
1996 Male, age 80, right hemisphere 0.2
2395 Male, age 75, both hemispheres 0.1
2772 Female, age 79, unknown 0.1
Globus pallidus, internus
nTPM: 0.2
1818 Male, age 74, unknown 0.3
2037 Male, age 80, right hemisphere 0.2
2111 Female, age 85, right hemisphere 0.2
2483 Female, age 94, right hemisphere 0.2
2566 Female, age 72, unknown 0.2
2287 Male, age 75, right hemisphere 0.1
2778 Female, age 91, both hemispheres 0.1
Nucleus accumbens
nTPM: 0.3
2286 Male, age 75, left hemisphere 0.4
2824 Male, age 61, right hemisphere 0.4
1783 Male, age 74, unknown 0.3
1856 Female, age 91, right hemisphere 0.3
1806 Female, age 85, left hemisphere 0.2
2698 Female, age 72, unknown 0.2
2732 Male, age 80, right hemisphere 0.2
2391 Female, age 94, left hemisphere 0.1
Nucleus basalis of Meynert
nTPM: 0.2
2393 Male, age 80, right hemisphere 0.3
2484 Female, age 94, left hemisphere 0.2
2569 Male, age 61, both hemispheres 0.2
2821 Male, age 75, both hemispheres 0.2
Nucleus of the diagonal band
nTPM: 0.2
2775 Male, age 80, right hemisphere 0.3
1812 Female, age 91, both hemispheres 0.2
1979 Male, age 74, unknown 0.2
2029 Male, age 61, right hemisphere 0.2
2195 Female, age 85, both hemispheres 0.1
Olfactory tubercle
nTPM: 0.1
1846 Male, age 80, right hemisphere 0.2
1998 Female, age 91, both hemispheres 0.1
2487 Female, age 94, left hemisphere 0.1
2856 Male, age 75, right hemisphere 0.1
Putamen
nTPM: 0.3
1829 Male, age 74, unknown 0.3
1838 Male, age 80, right hemisphere 0.3
2489 Female, age 72, unknown 0.3
2647 Male, age 75, left hemisphere 0.3
1937 Female, age 91, right hemisphere 0.2
2466 Female, age 79, unknown 0.2
2482 Female, age 94, left hemisphere 0.2
Septal nuclei
nTPM: 0.2
1960 Male, age 74, unknown 0.2
2009 Female, age 91, both hemispheres 0.2
2199 Male, age 80, right hemisphere 0.2
2031 Female, age 72, unknown 0.1
2059 Female, age 85, both hemispheres 0.1
2394 Male, age 61, left hemisphere 0.1
2629 Female, age 94, right hemisphere 0.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 0.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 0.2
Samples: 246

Max nTPM: 0.7
Min nTPM: 0.0
Std nTPM: 0.1
Median nTPM: 0.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 0.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 0.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 0.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 0.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 0.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 0.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 0.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 0.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 0.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 0.5
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 0.5
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 0.1
Samples: 246

Max nTPM: 0.5
Min nTPM: 0.0
Std nTPM: 0.0
Median nTPM: 0.1
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 0.5
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 0.5
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 0.4
GTEX-13SLW-0011-R6a-SM-5O9BH 70-79 years, male 0.4
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 0.4
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 0.4
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 0.4
GTEX-ZDXO-0011-R6a-SM-4WWCT 60-69 years, male 0.4
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 0.4
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 0.4
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 0.3
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 0.1
Samples: 205

Max nTPM: 0.8
Min nTPM: 0.0
Std nTPM: 0.1
Median nTPM: 0.1
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 0.8
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 0.8
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 0.6
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 0.6
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 0.5
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 0.5
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 0.5
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 0.4
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 0.4
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 0.4
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 0.4
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 0.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 0.1
FF:10164-103B2 76 years, female 0.1
Globus pallidus
Scaled Tags Per Million: 0.0
FF:10161-103A8 76 years, female 0.1
FF:10175-103C4 60 years, female 0.0
Nucleus accumbens
Scaled Tags Per Million: 0.0
FF:10037-101F1 23-56 years, mixed 0.0
Putamen
Scaled Tags Per Million: 0.2
FF:10176-103C5 60 years, female 0.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 2.5
Pig sample Sample description nTPM
Caudate
nTPM: 2.5
Samples: 4

Max nTPM: 2.7
Min nTPM: 1.9
Sample A Female 2.5
Sample B Female 2.7
Sample C Male 2.7
Sample D Male 1.9
Putamen
nTPM: 1.7
Samples: 4

Max nTPM: 1.9
Min nTPM: 1.4
Sample A Female 1.4
Sample B Female 1.7
Sample C Male 1.9
Sample D Male 1.6
Septum
nTPM: 2.4
Samples: 4

Max nTPM: 2.8
Min nTPM: 2.1
Sample A Female 2.3
Sample B Female 2.1
Sample C Male 2.2
Sample D Male 2.8
Ventral pallidum
nTPM: 1.9
Samples: 4

Max nTPM: 2.0
Min nTPM: 1.7
Sample A Female 2.0
Sample B Female 1.7
Sample C Male 1.8
Sample D Male 1.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 0.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0
Septum
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0
Ventral forebrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
71488846 Antisense, RP_050825_03_A11, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
71488846 Antisense, RP_050825_03_A11, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.