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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:232.4 nTPM
HPA:232.4 nTPM
GTEx:271.7 nTPM
FANTOM5:886.5 Scaled Tags Per Million
Pig:175.9 nTPM
Mouse:429.2 nTPM
Allen mouse:13.2 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max nTPM 232.4
Sample id Sample description nTPM
Amygdala
nTPM: 232.4
2814 Male, age 76, right hemisphere 247.5
2695 Female, age 67, right hemisphere 239.7
2514 Male, age 75, right hemisphere 236.8
2517 Female, age 94, left hemisphere 220.5
1987 Female, age 91, left hemisphere 217.5
Basal amygdala
nTPM: 206.4
2609 Male, age 75, right hemisphere 239.5
2685 Female, age 94, left hemisphere 219.4
2827 Female, age 67, right hemisphere 204.5
2110 Male, age 80, left hemisphere 200.7
2243 Female, age 91, right hemisphere 190.1
1955 Male, age 76, both hemispheres 184.3
Central amygdala
nTPM: 224.4
2826 Female, age 94, left hemisphere 263.4
2515 Male, age 75, right hemisphere 233.8
1905 Male, age 76, both hemispheres 215.2
2239 Male, age 80, left hemisphere 208.3
2701 Female, age 91, right hemisphere 201.5
Corticomedial amygdala
nTPM: 192.2
2829 Male, age 80, left hemisphere 213.5
2428 Male, age 75, right hemisphere 200.8
2242 Female, age 91, right hemisphere 199.7
2240 Male, age 76, both hemispheres 189.8
2429 Female, age 94, left hemisphere 179.7
2535 Female, age 67, right hemisphere 169.6
Lateral amygdala
nTPM: 211.4
2516 Male, age 75, right hemisphere 227.7
2256 Male, age 80, left hemisphere 222.3
2534 Female, age 94, left hemisphere 217.7
2255 Female, age 91, right hemisphere 202.5
1883 Male, age 76, both hemispheres 201.6
2830 Female, age 67, right hemisphere 196.4
Stria terminalis, bed nucleus
nTPM: 192.9
1974 Female, age 91, both hemispheres 204.2
2201 Male, age 74, unknown 195.6
2486 Female, age 94, both hemispheres 178.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 271.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 271.7
Samples: 152

Max nTPM: 535.1
Min nTPM: 130.6
Std nTPM: 75.5
Median nTPM: 255.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 535.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 518.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 516.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 499.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 486.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 473.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 437.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 433.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 423.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 421.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 412.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 408.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 399.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 378.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 360.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 359.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 356.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 355.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 351.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 350.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 346.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 341.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 338.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 337.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 334.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 324.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 324.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 321.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 321.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 318.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 317.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 316.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 316.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 315.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 314.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 313.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 310.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 305.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 299.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 296.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 295.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 294.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 292.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 289.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 289.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 286.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 285.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 285.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 283.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 283.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 277.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 277.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 276.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 274.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 273.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 272.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 272.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 272.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 270.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 269.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 268.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 268.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 268.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 267.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 266.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 265.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 264.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 264.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 263.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 262.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 259.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 258.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 258.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 257.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 255.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 255.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 255.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 255.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 255.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 254.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 254.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 253.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 251.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 248.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 247.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 246.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 246.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 246.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 246.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 245.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 243.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 242.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 240.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 239.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 239.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 238.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 237.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 237.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 236.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 235.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 234.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 234.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 234.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 233.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 233.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 231.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 230.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 229.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 229.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 228.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 227.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 226.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 225.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 223.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 222.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 220.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 218.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 218.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 216.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 216.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 216.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 215.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 214.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 214.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 213.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 212.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 208.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 206.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 206.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 206.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 202.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 202.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 202.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 202.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 196.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 195.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 194.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 192.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 191.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 188.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 188.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 185.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 184.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 180.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 178.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 176.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 172.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 170.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 166.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 160.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 159.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 130.6
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 886.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 886.5
FF:10151-102I7 76 years, female 886.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 175.9
Pig sample Sample description nTPM
Amygdala
nTPM: 175.9
Samples: 4

Max nTPM: 225.6
Min nTPM: 147.7
Sample A Female 225.6
Sample B Female 177.6
Sample C Male 147.7
Sample D Male 152.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 429.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 429.2
Samples: 4

Max nTPM: 461.6
Min nTPM: 405.8
Sample A Male 405.8
Sample B Male 429.7
Sample C Female 461.6
Sample D Female 419.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 13.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 13.2
67978400 Antisense, RP_040923_01_B01, Mouse strain C57BL/6J (56 days, male) 14.8
77791992 Antisense, RP_070208_04_C07, Mouse strain C57BL/6J (56 days, male) 11.6

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