MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:255.8 nTPM
HPA:255.8 nTPM
GTEx:333.5 nTPM
FANTOM5:1498.7 Scaled Tags Per Million
Pig:327.7 nTPM
Mouse:372.0 nTPM
Allen mouse:5.5 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 255.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 235.4
2666 Male, age 74, left hemisphere 255.4
1870 Female, age 42, unknown 249.7
2019 Male, age 18, unknown 245.3
1830 Male, age 51, unknown 242.5
1833 Male, age 53, unknown 239.4
2586 Male, age 75, left hemisphere 238.5
1827 Male, age 72, unknown 230.0
2411 Female, age 72, unknown 229.5
2828 Female, age 72, unknown 220.1
2219 Male, age 76, both hemispheres 203.5
Dorsal raphe nucleus
nTPM: 221.2
2750 Male, age 76, both hemispheres 244.5
1828 Male, age 53, unknown 230.5
2047 Male, age 72, unknown 211.7
2016 Female, age 72, unknown 210.1
2298 Female, age 72, unknown 209.0
Inferior colliculus
nTPM: 219.3
2849 Male, age 72, unknown 231.9
2097 Female, age 72, unknown 219.4
1848 Female, age 42, unknown 213.4
1890 Male, age 53, unknown 212.5
Median raphe nucleus
nTPM: 247.1
2220 Male, age 76, midline 247.1
Pedunculopontine tegmental nucleus
nTPM: 228.3
2334 Male, age 80, both hemispheres 261.2
2338 Male, age 61, both hemispheres 215.6
1921 Female, age 85, both hemispheres 208.1
Periaquaductal grey, anterior
nTPM: 215.7
2502 Female, age 75, unknown 224.4
1947 Male, age 18, unknown 216.1
1795 Male, age 51, unknown 206.6
Periaquaductal grey, dorsal
nTPM: 212.5
2850 Male, age 76, both hemispheres 239.5
1831 Male, age 72, unknown 220.0
2464 Female, age 72, unknown 198.2
1840 Male, age 53, unknown 192.2
Periaquaductal grey, lateral
nTPM: 217.5
2053 Male, age 18, unknown 224.3
2140 Male, age 76, both hemispheres 222.8
2272 Male, age 74, both hemispheres 205.3
Pretectal area
nTPM: 229.6
1817 Female, age 42, unknown 264.3
1815 Male, age 53, unknown 257.0
2667 Female, age 75, unknown 238.9
2007 Male, age 72, unknown 234.8
2825 Male, age 18, unknown 231.9
1816 Male, age 51, unknown 231.8
2316 Male, age 76, right hemisphere 230.7
2407 Male, age 75, both hemispheres 213.2
2224 Female, age 72, unknown 209.3
1944 Female, age 72, unknown 208.4
2273 Male, age 74, both hemispheres 205.8
Red nucleus
nTPM: 255.8
1821 Female, age 72, unknown 302.3
2503 Female, age 72, unknown 263.4
1954 Female, age 42, unknown 261.0
1904 Male, age 53, unknown 260.6
2769 Male, age 72, unknown 259.5
1865 Male, age 51, unknown 257.8
2584 Male, age 75, left hemisphere 252.5
2227 Male, age 72, unknown 251.3
2823 Male, age 76, right hemisphere 241.4
2785 Male, age 18, unknown 241.1
2725 Female, age 75, unknown 241.0
2588 Male, age 74, left hemisphere 238.2
Substantia nigra
nTPM: 227.1
2665 Male, age 74, both hemispheres 251.5
1851 Male, age 51, unknown 239.1
1889 Female, age 72, unknown 233.9
2699 Male, age 18, unknown 233.2
1916 Female, age 42, unknown 230.5
2583 Male, age 75, right hemisphere 228.8
2590 Female, age 75, unknown 227.5
1941 Male, age 53, unknown 223.5
2241 Male, age 72, unknown 201.6
2409 Female, age 72, unknown 201.2
Superior colliculus
nTPM: 228.5
1913 Female, age 42, unknown 247.9
2587 Male, age 74, left hemisphere 246.1
1995 Male, age 72, unknown 241.0
1839 Male, age 51, unknown 235.7
1895 Male, age 76, right hemisphere 230.5
2664 Male, age 75, both hemispheres 224.5
2668 Female, age 75, unknown 220.2
1796 Male, age 53, unknown 218.0
2261 Male, age 18, unknown 213.2
2087 Female, age 72, unknown 207.7
Ventral tegmental area
nTPM: 231.5
2223 Female, age 72, unknown 284.5
2021 Male, age 53, unknown 227.9
2218 Male, age 76, both hemispheres 226.6
2410 Female, age 72, unknown 221.9
1915 Female, age 42, unknown 219.4
1942 Male, age 51, unknown 208.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 333.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 333.5
Samples: 139

Max nTPM: 758.6
Min nTPM: 183.8
Std nTPM: 90.4
Median nTPM: 316.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 758.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 608.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 518.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 515.3
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 513.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 502.9
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 499.0
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 492.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 489.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 486.0
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 481.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1498.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1498.7
FF:10158-103A5 76 years, female 1498.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 327.7
Pig sample Sample description nTPM
Midbrain
nTPM: 314.0
Samples: 4

Max nTPM: 456.8
Min nTPM: 242.8
Sample A Female 456.8
Sample B Female 301.3
Sample C Male 242.8
Sample D Male 254.9
Periaqueductal gray
nTPM: 254.5
Samples: 3

Max nTPM: 271.5
Min nTPM: 236.7
Sample B Female 255.4
Sample C Male 271.5
Sample D Male 236.7
Substantia nigra
nTPM: 307.0
Samples: 4

Max nTPM: 388.0
Min nTPM: 254.9
Sample A Female 388.0
Sample B Female 254.9
Sample C Male 290.9
Sample D Male 294.2
Superior colliculi
nTPM: 327.7
Samples: 4

Max nTPM: 424.5
Min nTPM: 279.6
Sample A Female 424.5
Sample B Female 320.5
Sample C Male 279.6
Sample D Male 286.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 372.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 372.1
Samples: 4

Max nTPM: 398.2
Min nTPM: 361.7
Sample A Male 398.2
Sample B Male 362.3
Sample C Female 361.7
Sample D Female 366.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.5
77791992 Antisense, RP_070208_04_C07, Mouse strain C57BL/6J (56 days, male) 6.0
67978400 Antisense, RP_040923_01_B01, Mouse strain C57BL/6J (56 days, male) 5.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.