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TISSUE SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:256.2 nTPM
HPA:256.2 nTPM
GTEx:389.7 nTPM
FANTOM5:1259.2 Scaled Tags Per Million
Pig:386.7 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 256.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 244.2
2565 Male, age 75, midline 282.7
1981 Female, age 72, midline 261.8
2816 Male, age 47, midline 248.1
2048 Male, age 55, midline 221.1
2194 Female, age 79, both hemispheres 207.4
Cervical spinal cord, dorsal horn
nTPM: 244.8
2296 Male, age 66, both hemispheres 288.3
2173 Female, age 72, unknown 276.6
2069 Male, age 47, both hemispheres 252.2
1877 Male, age 55, unknown 236.5
2297 Male, age 75, both hemispheres 224.8
2721 Male, age 90, both hemispheres 190.2
Cervical spinal cord, ventral horn
nTPM: 256.2
2098 Female, age 72, unknown 295.3
2809 Male, age 90, both hemispheres 275.3
2480 Male, age 75, both hemispheres 264.7
2068 Male, age 55, unknown 252.2
2295 Male, age 66, both hemispheres 239.5
2820 Female, age 79, both hemispheres 209.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 389.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 389.7
Samples: 159

Max nTPM: 718.6
Min nTPM: 192.4
Std nTPM: 84.3
Median nTPM: 390.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 718.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 598.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 583.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 576.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 557.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 554.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 544.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 541.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 533.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 532.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 525.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 510.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 510.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 502.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 498.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 493.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 491.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 490.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 485.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 482.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 479.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 477.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 475.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 472.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 471.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 466.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 464.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 461.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 458.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 447.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 446.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 444.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 441.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 439.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 439.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 437.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 437.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 436.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 436.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 436.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 435.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 434.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 432.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 432.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 430.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 430.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 429.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 428.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 427.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 425.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 422.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 421.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 420.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 420.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 420.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 418.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 418.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 417.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 416.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 416.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 415.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 414.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 411.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 410.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 410.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 410.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 408.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 407.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 406.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 400.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 398.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 395.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 394.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 394.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 394.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 393.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 392.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 391.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 391.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 390.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 390.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 390.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 388.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 387.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 387.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 384.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 383.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 381.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 378.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 372.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 370.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 370.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 367.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 366.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 366.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 365.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 364.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 364.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 364.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 363.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 363.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 359.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 358.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 357.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 353.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 353.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 352.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 352.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 350.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 349.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 344.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 343.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 343.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 343.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 340.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 339.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 337.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 335.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 334.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 333.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 332.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 331.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 331.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 328.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 328.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 327.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 326.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 325.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 324.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 322.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 321.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 319.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 319.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 316.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 316.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 312.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 307.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 304.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 303.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 298.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 297.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 295.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 293.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 290.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 279.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 275.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 268.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 262.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 261.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 247.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 241.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 238.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 233.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 231.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 221.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 220.2
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 215.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 207.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 192.4
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1259.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1259.2
FF:10181-103D1 60 years, female 1306.0
FF:10159-103A6 76 years, female 1212.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 386.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 359.4
Samples: 4

Max nTPM: 471.2
Min nTPM: 303.2
Sample A Female 303.2
Sample B Female 344.2
Sample C Male 471.2
Sample D Male 319.0
Ventral spinal cord
nTPM: 386.7
Samples: 4

Max nTPM: 425.0
Min nTPM: 357.1
Sample A Female 357.1
Sample B Female 370.2
Sample C Male 425.0
Sample D Male 394.4

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