BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:9.1 nTPM
HPA:9.1 nTPM
GTEx:3.2 nTPM
FANTOM5:89.6 Scaled Tags Per Million
Pig:70.8 nTPM
Mouse:11.1 nTPM
Allen mouse:3.5 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA039162
Glial cells Not detected
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 9.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 4.1
2846 Female, age 79, unknown 7.9
1857 Female, age 85, left hemisphere 5.9
1854 Male, age 80, left hemisphere 5.6
2289 Male, age 61, right hemisphere 4.5
1781 Male, age 74, unknown 4.2
2288 Male, age 75, left hemisphere 3.0
2290 Female, age 72, unknown 1.6
2481 Female, age 94, left hemisphere 0.0
Claustrum
nTPM: 3.4
2292 Female, age 85, both hemispheres 12.6
2568 Male, age 61, both hemispheres 9.4
2196 Female, age 79, unknown 4.7
1956 Male, age 74, unknown 3.8
2491 Male, age 75, both hemispheres 0.5
2198 Male, age 80, both hemispheres 0.0
2284 Female, age 91, both hemispheres 0.0
2392 Female, age 94, both hemispheres 0.0
2645 Female, age 72, unknown 0.0
Globus pallidus, externus
nTPM: 6.4
2567 Female, age 72, unknown 13.3
2646 Male, age 61, right hemisphere 12.6
1996 Male, age 80, right hemisphere 6.1
2395 Male, age 75, both hemispheres 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 9.1
2566 Female, age 72, unknown 17.5
2037 Male, age 80, right hemisphere 11.8
1818 Male, age 74, unknown 9.4
2111 Female, age 85, right hemisphere 7.0
2287 Male, age 75, right hemisphere 6.4
2483 Female, age 94, right hemisphere 6.2
2778 Female, age 91, both hemispheres 5.7
Nucleus accumbens
nTPM: 5.3
2698 Female, age 72, unknown 21.2
2391 Female, age 94, left hemisphere 7.8
1783 Male, age 74, unknown 5.6
1806 Female, age 85, left hemisphere 4.2
2824 Male, age 61, right hemisphere 2.2
1856 Female, age 91, right hemisphere 1.6
2286 Male, age 75, left hemisphere 0.0
2732 Male, age 80, right hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 7.2
2569 Male, age 61, both hemispheres 15.2
2821 Male, age 75, both hemispheres 10.6
2393 Male, age 80, right hemisphere 3.2
2484 Female, age 94, left hemisphere 0.0
Nucleus of the diagonal band
nTPM: 0.0
1979 Male, age 74, unknown 0.4
1812 Female, age 91, both hemispheres 0.0
2029 Male, age 61, right hemisphere 0.0
2195 Female, age 85, both hemispheres 0.0
2775 Male, age 80, right hemisphere 0.0
Olfactory tubercle
nTPM: 0.3
2856 Male, age 75, right hemisphere 1.3
1846 Male, age 80, right hemisphere 0.0
1998 Female, age 91, both hemispheres 0.0
2487 Female, age 94, left hemisphere 0.0
Putamen
nTPM: 4.5
2647 Male, age 75, left hemisphere 7.7
1829 Male, age 74, unknown 7.6
1838 Male, age 80, right hemisphere 5.7
2482 Female, age 94, left hemisphere 5.4
2489 Female, age 72, unknown 3.7
1937 Female, age 91, right hemisphere 1.2
2466 Female, age 79, unknown 0.0
Septal nuclei
nTPM: 0.8
2629 Female, age 94, right hemisphere 6.2
1960 Male, age 74, unknown 0.0
2009 Female, age 91, both hemispheres 0.0
2031 Female, age 72, unknown 0.0
2059 Female, age 85, both hemispheres 0.0
2199 Male, age 80, right hemisphere 0.0
2394 Male, age 61, left hemisphere 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 3.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 3.2
Samples: 246

Max nTPM: 5.8
Min nTPM: 1.5
Std nTPM: 0.7
Median nTPM: 3.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 5.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 5.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 5.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 4.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 4.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 4.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 4.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 4.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 4.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 4.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 4.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 3.2
Samples: 246

Max nTPM: 7.3
Min nTPM: 1.7
Std nTPM: 0.8
Median nTPM: 3.1
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 7.3
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 6.4
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 6.1
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 6.1
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 6.0
GTEX-14C5O-0011-R6a-SM-5YYB6 60-69 years, male 5.4
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 5.3
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 5.3
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 5.2
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 5.2
GTEX-15DCD-0011-R6b-SM-6M46L 70-79 years, female 5.1
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Brain - Putamen (basal ganglia)
Average nTPM: 2.9
Samples: 205

Max nTPM: 6.1
Min nTPM: 1.4
Std nTPM: 0.7
Median nTPM: 2.8
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 6.1
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 5.5
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 5.2
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 5.0
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 4.7
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 4.5
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 4.3
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 4.1
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 4.0
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 4.0
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 4.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 89.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 67.7
FF:10164-103B2 76 years, female 67.7
Globus pallidus
Scaled Tags Per Million: 65.3
FF:10161-103A8 76 years, female 78.5
FF:10175-103C4 60 years, female 52.0
Nucleus accumbens
Scaled Tags Per Million: 76.5
FF:10037-101F1 23-56 years, mixed 76.5
Putamen
Scaled Tags Per Million: 89.6
FF:10176-103C5 60 years, female 89.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 70.8
Pig sample Sample description nTPM
Caudate
nTPM: 63.5
Samples: 4

Max nTPM: 69.3
Min nTPM: 55.0
Sample A Female 68.3
Sample B Female 69.3
Sample C Male 55.0
Sample D Male 61.5
Putamen
nTPM: 70.9
Samples: 4

Max nTPM: 83.9
Min nTPM: 62.6
Sample A Female 83.9
Sample B Female 62.6
Sample C Male 68.4
Sample D Male 68.5
Septum
nTPM: 64.0
Samples: 4

Max nTPM: 74.8
Min nTPM: 55.0
Sample A Female 74.8
Sample B Female 66.4
Sample C Male 55.0
Sample D Male 59.8
Ventral pallidum
nTPM: 67.5
Samples: 4

Max nTPM: 76.2
Min nTPM: 60.2
Sample A Female 76.2
Sample B Female 63.7
Sample C Male 60.2
Sample D Male 69.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 11.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 11.1
Samples: 4

Max nTPM: 11.6
Min nTPM: 10.7
Sample A Male 10.7
Sample B Male 11.1
Sample C Female 11.6
Sample D Female 10.9
Septum
nTPM: 10.9
Samples: 4

Max nTPM: 11.8
Min nTPM: 9.7
Sample A Male 11.2
Sample B Male 10.7
Sample C Female 9.7
Sample D Female 11.8
Ventral forebrain
nTPM: 9.9
Samples: 4

Max nTPM: 11.6
Min nTPM: 8.2
Sample A Male 9.8
Sample B Male 11.6
Sample C Female 8.2
Sample D Female 9.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 3.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 3.5
70300780 Antisense, RP_050607_02_D03, Mouse strain C57BL/6J (56 days, male) 7.1
71212626 Antisense, RP_050816_03_E12, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 3.4
70300780 Antisense, RP_050607_02_D03, Mouse strain C57BL/6J (56 days, male) 6.7
71212626 Antisense, RP_050816_03_E12, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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