MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:29.5 nTPM
HPA:29.5 nTPM
GTEx:25.1 nTPM
FANTOM5:25.1 Scaled Tags Per Million
Pig:12.0 nTPM
Mouse:20.8 nTPM
Allen mouse:9.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 29.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.3
2666 Male, age 74, left hemisphere 30.3
2019 Male, age 18, unknown 27.5
2828 Female, age 72, unknown 27.3
1870 Female, age 42, unknown 27.0
1830 Male, age 51, unknown 26.9
1833 Male, age 53, unknown 26.4
2219 Male, age 76, both hemispheres 25.4
2411 Female, age 72, unknown 25.4
1827 Male, age 72, unknown 23.9
2586 Male, age 75, left hemisphere 22.8
Dorsal raphe nucleus
nTPM: 24.5
1828 Male, age 53, unknown 26.1
2750 Male, age 76, both hemispheres 25.9
2047 Male, age 72, unknown 24.2
2016 Female, age 72, unknown 23.8
2298 Female, age 72, unknown 22.5
Inferior colliculus
nTPM: 26.1
1890 Male, age 53, unknown 27.7
2097 Female, age 72, unknown 26.5
2849 Male, age 72, unknown 25.5
1848 Female, age 42, unknown 24.8
Median raphe nucleus
nTPM: 23.9
2220 Male, age 76, midline 23.9
Pedunculopontine tegmental nucleus
nTPM: 26.0
2334 Male, age 80, both hemispheres 27.9
2338 Male, age 61, both hemispheres 25.6
1921 Female, age 85, both hemispheres 24.6
Periaquaductal grey, anterior
nTPM: 24.6
2502 Female, age 75, unknown 25.6
1947 Male, age 18, unknown 25.4
1795 Male, age 51, unknown 22.8
Periaquaductal grey, dorsal
nTPM: 24.0
2464 Female, age 72, unknown 25.3
1831 Male, age 72, unknown 24.7
2850 Male, age 76, both hemispheres 23.5
1840 Male, age 53, unknown 22.4
Periaquaductal grey, lateral
nTPM: 23.5
2053 Male, age 18, unknown 23.8
2272 Male, age 74, both hemispheres 23.6
2140 Male, age 76, both hemispheres 23.2
Pretectal area
nTPM: 24.4
1817 Female, age 42, unknown 27.6
2007 Male, age 72, unknown 26.7
1815 Male, age 53, unknown 26.2
2316 Male, age 76, right hemisphere 25.1
1816 Male, age 51, unknown 24.7
1944 Female, age 72, unknown 24.5
2667 Female, age 75, unknown 24.4
2825 Male, age 18, unknown 23.9
2224 Female, age 72, unknown 22.9
2273 Male, age 74, both hemispheres 21.4
2407 Male, age 75, both hemispheres 20.7
Red nucleus
nTPM: 29.5
2588 Male, age 74, left hemisphere 33.8
1954 Female, age 42, unknown 32.4
2823 Male, age 76, right hemisphere 31.8
1821 Female, age 72, unknown 30.4
1904 Male, age 53, unknown 30.2
2769 Male, age 72, unknown 29.6
2503 Female, age 72, unknown 29.5
2227 Male, age 72, unknown 29.0
1865 Male, age 51, unknown 28.0
2785 Male, age 18, unknown 27.2
2725 Female, age 75, unknown 26.9
2584 Male, age 75, left hemisphere 25.4
Substantia nigra
nTPM: 26.5
2665 Male, age 74, both hemispheres 36.3
1851 Male, age 51, unknown 26.8
2409 Female, age 72, unknown 26.3
1916 Female, age 42, unknown 26.2
2241 Male, age 72, unknown 26.0
2590 Female, age 75, unknown 25.7
1889 Female, age 72, unknown 25.5
2699 Male, age 18, unknown 25.2
1941 Male, age 53, unknown 23.9
2583 Male, age 75, right hemisphere 23.5
Superior colliculus
nTPM: 24.3
2587 Male, age 74, left hemisphere 27.0
1895 Male, age 76, right hemisphere 25.6
1839 Male, age 51, unknown 24.9
2087 Female, age 72, unknown 24.8
2668 Female, age 75, unknown 24.8
2261 Male, age 18, unknown 24.3
1995 Male, age 72, unknown 23.9
1913 Female, age 42, unknown 23.4
1796 Male, age 53, unknown 22.7
2664 Male, age 75, both hemispheres 21.6
Ventral tegmental area
nTPM: 25.5
2218 Male, age 76, both hemispheres 26.2
2410 Female, age 72, unknown 26.2
1942 Male, age 51, unknown 25.6
2021 Male, age 53, unknown 25.4
2223 Female, age 72, unknown 25.2
1915 Female, age 42, unknown 24.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 25.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 25.1
Samples: 139

Max nTPM: 147.5
Min nTPM: 1.5
Std nTPM: 17.4
Median nTPM: 21.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 147.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 89.1
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 67.3
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 65.5
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 63.7
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 62.2
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 59.8
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 55.2
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 49.5
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 49.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 48.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 25.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 25.1
FF:10158-103A5 76 years, female 25.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 12.0
Pig sample Sample description nTPM
Midbrain
nTPM: 10.1
Samples: 4

Max nTPM: 11.7
Min nTPM: 7.8
Sample A Female 10.9
Sample B Female 7.8
Sample C Male 11.7
Sample D Male 10.1
Periaqueductal gray
nTPM: 5.7
Samples: 3

Max nTPM: 6.2
Min nTPM: 5.2
Sample B Female 5.2
Sample C Male 6.2
Sample D Male 5.7
Substantia nigra
nTPM: 12.0
Samples: 4

Max nTPM: 14.5
Min nTPM: 9.9
Sample A Female 10.9
Sample B Female 14.5
Sample C Male 9.9
Sample D Male 12.6
Superior colliculi
nTPM: 11.4
Samples: 4

Max nTPM: 14.3
Min nTPM: 7.0
Sample A Female 12.6
Sample B Female 7.0
Sample C Male 11.6
Sample D Male 14.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 20.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 20.8
Samples: 4

Max nTPM: 22.3
Min nTPM: 20.1
Sample A Male 20.6
Sample B Male 20.3
Sample C Female 20.1
Sample D Female 22.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.6
67936418 Antisense, RP_040617_02_D08, Mouse strain C57BL/6J (56 days, male) 10.6
74047898 Antisense, RP_051214_02_B08, Mouse strain C57BL/6J (56 days, male) 8.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.