MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:14.0 nTPM
HPA:14.0 nTPM
GTEx:23.8 nTPM
FANTOM5:53.9 Scaled Tags Per Million
Pig:32.9 nTPM
Mouse:36.0 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 14.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.8
1870 Female, age 42, unknown 13.1
2019 Male, age 18, unknown 13.1
1827 Male, age 72, unknown 12.4
2219 Male, age 76, both hemispheres 12.2
2411 Female, age 72, unknown 12.2
1833 Male, age 53, unknown 12.1
1830 Male, age 51, unknown 11.9
2666 Male, age 74, left hemisphere 11.2
2586 Male, age 75, left hemisphere 10.4
2828 Female, age 72, unknown 9.9
Dorsal raphe nucleus
nTPM: 13.4
2298 Female, age 72, unknown 16.1
2750 Male, age 76, both hemispheres 13.3
2047 Male, age 72, unknown 12.6
2016 Female, age 72, unknown 12.5
1828 Male, age 53, unknown 12.4
Inferior colliculus
nTPM: 11.9
2097 Female, age 72, unknown 13.4
1890 Male, age 53, unknown 11.8
2849 Male, age 72, unknown 11.3
1848 Female, age 42, unknown 11.0
Median raphe nucleus
nTPM: 14.0
2220 Male, age 76, midline 14.0
Pedunculopontine tegmental nucleus
nTPM: 12.7
2334 Male, age 80, both hemispheres 14.0
1921 Female, age 85, both hemispheres 12.9
2338 Male, age 61, both hemispheres 11.4
Periaquaductal grey, anterior
nTPM: 12.9
1947 Male, age 18, unknown 13.7
2502 Female, age 75, unknown 12.7
1795 Male, age 51, unknown 12.3
Periaquaductal grey, dorsal
nTPM: 13.1
2850 Male, age 76, both hemispheres 15.9
1840 Male, age 53, unknown 13.0
1831 Male, age 72, unknown 11.9
2464 Female, age 72, unknown 11.6
Periaquaductal grey, lateral
nTPM: 13.4
2272 Male, age 74, both hemispheres 16.6
2140 Male, age 76, both hemispheres 12.7
2053 Male, age 18, unknown 11.0
Pretectal area
nTPM: 13.6
2273 Male, age 74, both hemispheres 15.5
2007 Male, age 72, unknown 14.7
1816 Male, age 51, unknown 14.6
1944 Female, age 72, unknown 14.6
2224 Female, age 72, unknown 14.4
1817 Female, age 42, unknown 14.3
2667 Female, age 75, unknown 14.1
1815 Male, age 53, unknown 13.8
2825 Male, age 18, unknown 12.0
2316 Male, age 76, right hemisphere 11.0
2407 Male, age 75, both hemispheres 10.7
Red nucleus
nTPM: 11.9
2725 Female, age 75, unknown 13.1
2785 Male, age 18, unknown 12.8
1821 Female, age 72, unknown 12.7
2227 Male, age 72, unknown 12.0
1904 Male, age 53, unknown 11.9
1954 Female, age 42, unknown 11.9
2588 Male, age 74, left hemisphere 11.8
1865 Male, age 51, unknown 11.5
2823 Male, age 76, right hemisphere 11.4
2503 Female, age 72, unknown 11.3
2769 Male, age 72, unknown 11.3
2584 Male, age 75, left hemisphere 11.1
Substantia nigra
nTPM: 13.4
1916 Female, age 42, unknown 15.7
1941 Male, age 53, unknown 15.5
1889 Female, age 72, unknown 15.1
2241 Male, age 72, unknown 14.8
1851 Male, age 51, unknown 13.9
2409 Female, age 72, unknown 12.5
2583 Male, age 75, right hemisphere 12.2
2699 Male, age 18, unknown 12.2
2665 Male, age 74, both hemispheres 11.2
2590 Female, age 75, unknown 11.1
Superior colliculus
nTPM: 12.0
2261 Male, age 18, unknown 13.9
2087 Female, age 72, unknown 13.4
2587 Male, age 74, left hemisphere 12.9
2668 Female, age 75, unknown 12.6
1895 Male, age 76, right hemisphere 12.0
1995 Male, age 72, unknown 11.8
1913 Female, age 42, unknown 11.3
1839 Male, age 51, unknown 11.2
1796 Male, age 53, unknown 11.1
2664 Male, age 75, both hemispheres 10.0
Ventral tegmental area
nTPM: 12.6
2223 Female, age 72, unknown 13.0
1915 Female, age 42, unknown 12.8
1942 Male, age 51, unknown 12.8
2218 Male, age 76, both hemispheres 12.7
2410 Female, age 72, unknown 12.6
2021 Male, age 53, unknown 11.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 23.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 23.8
Samples: 139

Max nTPM: 46.0
Min nTPM: 11.2
Std nTPM: 6.4
Median nTPM: 23.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 46.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 43.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 41.2
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 40.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 40.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 39.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 34.6
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 34.0
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 33.5
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 33.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 32.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 53.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 53.9
FF:10158-103A5 76 years, female 53.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 32.9
Pig sample Sample description nTPM
Midbrain
nTPM: 32.9
Samples: 4

Max nTPM: 38.5
Min nTPM: 26.2
Sample A Female 38.5
Sample B Female 26.2
Sample C Male 36.0
Sample D Male 30.8
Periaqueductal gray
nTPM: 25.0
Samples: 3

Max nTPM: 28.9
Min nTPM: 22.6
Sample B Female 22.6
Sample C Male 28.9
Sample D Male 23.5
Substantia nigra
nTPM: 28.9
Samples: 4

Max nTPM: 36.6
Min nTPM: 23.8
Sample A Female 36.6
Sample B Female 23.8
Sample C Male 29.5
Sample D Male 25.6
Superior colliculi
nTPM: 31.8
Samples: 4

Max nTPM: 37.2
Min nTPM: 27.1
Sample A Female 37.2
Sample B Female 31.5
Sample C Male 31.3
Sample D Male 27.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 36.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 36.0
Samples: 4

Max nTPM: 39.1
Min nTPM: 34.3
Sample A Male 39.1
Sample B Male 35.4
Sample C Female 34.3
Sample D Female 35.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
70429495 Antisense, RP_050614_01_G10, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.