MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:380.9 nTPM
HPA:380.9 nTPM
GTEx:502.1 nTPM
FANTOM5:17.3 Scaled Tags Per Million
Pig:275.4 nTPM
Mouse:648.3 nTPM
Allen mouse:15.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 380.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 350.2
2219 Male, age 76, both hemispheres 370.1
1870 Female, age 42, unknown 368.7
2411 Female, age 72, unknown 364.6
1830 Male, age 51, unknown 355.2
1833 Male, age 53, unknown 354.8
1827 Male, age 72, unknown 349.9
2828 Female, age 72, unknown 348.0
2666 Male, age 74, left hemisphere 338.3
2019 Male, age 18, unknown 332.6
2586 Male, age 75, left hemisphere 319.6
Dorsal raphe nucleus
nTPM: 348.8
2750 Male, age 76, both hemispheres 357.8
2298 Female, age 72, unknown 354.5
2016 Female, age 72, unknown 353.2
1828 Male, age 53, unknown 347.2
2047 Male, age 72, unknown 331.4
Inferior colliculus
nTPM: 361.3
1848 Female, age 42, unknown 375.6
2849 Male, age 72, unknown 360.1
2097 Female, age 72, unknown 356.7
1890 Male, age 53, unknown 352.9
Median raphe nucleus
nTPM: 348.2
2220 Male, age 76, midline 348.2
Pedunculopontine tegmental nucleus
nTPM: 380.9
2338 Male, age 61, both hemispheres 392.6
2334 Male, age 80, both hemispheres 388.6
1921 Female, age 85, both hemispheres 361.3
Periaquaductal grey, anterior
nTPM: 380.1
2502 Female, age 75, unknown 414.4
1947 Male, age 18, unknown 385.5
1795 Male, age 51, unknown 340.3
Periaquaductal grey, dorsal
nTPM: 359.3
1831 Male, age 72, unknown 376.7
1840 Male, age 53, unknown 363.3
2850 Male, age 76, both hemispheres 349.8
2464 Female, age 72, unknown 347.5
Periaquaductal grey, lateral
nTPM: 362.8
2272 Male, age 74, both hemispheres 394.2
2140 Male, age 76, both hemispheres 347.6
2053 Male, age 18, unknown 346.8
Pretectal area
nTPM: 354.9
2273 Male, age 74, both hemispheres 390.1
2407 Male, age 75, both hemispheres 371.0
2224 Female, age 72, unknown 362.1
2825 Male, age 18, unknown 356.0
1944 Female, age 72, unknown 354.0
1816 Male, age 51, unknown 349.8
2667 Female, age 75, unknown 348.5
1817 Female, age 42, unknown 348.4
1815 Male, age 53, unknown 348.0
2007 Male, age 72, unknown 347.8
2316 Male, age 76, right hemisphere 328.2
Red nucleus
nTPM: 351.0
2503 Female, age 72, unknown 420.3
1821 Female, age 72, unknown 380.0
1865 Male, age 51, unknown 365.0
1954 Female, age 42, unknown 352.5
2227 Male, age 72, unknown 350.5
1904 Male, age 53, unknown 349.5
2769 Male, age 72, unknown 341.5
2584 Male, age 75, left hemisphere 339.3
2725 Female, age 75, unknown 338.4
2823 Male, age 76, right hemisphere 336.1
2785 Male, age 18, unknown 324.6
2588 Male, age 74, left hemisphere 314.8
Substantia nigra
nTPM: 359.0
2699 Male, age 18, unknown 417.8
1941 Male, age 53, unknown 375.7
1851 Male, age 51, unknown 364.5
2409 Female, age 72, unknown 362.7
2665 Male, age 74, both hemispheres 358.9
1889 Female, age 72, unknown 357.2
2241 Male, age 72, unknown 347.7
1916 Female, age 42, unknown 346.6
2590 Female, age 75, unknown 340.0
2583 Male, age 75, right hemisphere 319.4
Superior colliculus
nTPM: 351.9
1913 Female, age 42, unknown 368.1
1995 Male, age 72, unknown 364.2
2261 Male, age 18, unknown 362.8
1895 Male, age 76, right hemisphere 356.7
1796 Male, age 53, unknown 356.2
2668 Female, age 75, unknown 354.2
2087 Female, age 72, unknown 351.3
1839 Male, age 51, unknown 349.9
2664 Male, age 75, both hemispheres 332.5
2587 Male, age 74, left hemisphere 323.3
Ventral tegmental area
nTPM: 363.4
2410 Female, age 72, unknown 386.4
2223 Female, age 72, unknown 377.0
2218 Male, age 76, both hemispheres 371.6
1942 Male, age 51, unknown 356.0
1915 Female, age 42, unknown 354.8
2021 Male, age 53, unknown 334.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 502.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 502.1
Samples: 139

Max nTPM: 969.8
Min nTPM: 235.5
Std nTPM: 150.0
Median nTPM: 482.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 969.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 888.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 867.0
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 856.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 814.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 813.7
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 799.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 755.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 733.1
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 730.2
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 724.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 17.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 17.3
FF:10158-103A5 76 years, female 17.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 275.4
Pig sample Sample description nTPM
Midbrain
nTPM: 256.1
Samples: 4

Max nTPM: 353.3
Min nTPM: 194.9
Sample A Female 353.3
Sample B Female 262.4
Sample C Male 194.9
Sample D Male 213.6
Periaqueductal gray
nTPM: 221.3
Samples: 3

Max nTPM: 229.6
Min nTPM: 205.7
Sample B Female 228.7
Sample C Male 229.6
Sample D Male 205.7
Substantia nigra
nTPM: 264.9
Samples: 4

Max nTPM: 301.7
Min nTPM: 222.6
Sample A Female 301.7
Sample B Female 292.8
Sample C Male 242.4
Sample D Male 222.6
Superior colliculi
nTPM: 275.4
Samples: 4

Max nTPM: 311.5
Min nTPM: 236.0
Sample A Female 309.1
Sample B Female 311.5
Sample C Male 236.0
Sample D Male 244.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 648.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 648.3
Samples: 4

Max nTPM: 669.1
Min nTPM: 621.8
Sample A Male 669.1
Sample B Male 655.5
Sample C Female 621.8
Sample D Female 646.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 15.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.8
69095958 Antisense, RP_050324_02_E07, Mouse strain C57BL/6J (56 days, male) 15.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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