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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:367.7 nTPM
HPA:367.7 nTPM
GTEx:477.7 nTPM
FANTOM5:11.4 Scaled Tags Per Million
Pig:213.2 nTPM
Mouse:618.7 nTPM
Allen mouse:13.9 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 367.7
Sample id Sample description nTPM
Amygdala
nTPM: 367.7
2517 Female, age 94, left hemisphere 414.3
2814 Male, age 76, right hemisphere 364.1
2695 Female, age 67, right hemisphere 355.9
1987 Female, age 91, left hemisphere 352.9
2514 Male, age 75, right hemisphere 351.1
Basal amygdala
nTPM: 341.8
2243 Female, age 91, right hemisphere 362.0
2827 Female, age 67, right hemisphere 360.9
1955 Male, age 76, both hemispheres 353.1
2110 Male, age 80, left hemisphere 329.4
2685 Female, age 94, left hemisphere 324.5
2609 Male, age 75, right hemisphere 321.1
Central amygdala
nTPM: 357.9
2515 Male, age 75, right hemisphere 386.2
2239 Male, age 80, left hemisphere 364.0
2826 Female, age 94, left hemisphere 356.5
1905 Male, age 76, both hemispheres 355.6
2701 Female, age 91, right hemisphere 327.3
Corticomedial amygdala
nTPM: 363.0
2428 Male, age 75, right hemisphere 394.4
2429 Female, age 94, left hemisphere 393.0
2242 Female, age 91, right hemisphere 363.2
2535 Female, age 67, right hemisphere 361.8
2829 Male, age 80, left hemisphere 340.9
2240 Male, age 76, both hemispheres 324.6
Lateral amygdala
nTPM: 366.3
2516 Male, age 75, right hemisphere 408.3
2534 Female, age 94, left hemisphere 399.3
2256 Male, age 80, left hemisphere 368.9
2830 Female, age 67, right hemisphere 357.4
1883 Male, age 76, both hemispheres 345.9
2255 Female, age 91, right hemisphere 318.0
Stria terminalis, bed nucleus
nTPM: 348.7
2486 Female, age 94, both hemispheres 369.7
1974 Female, age 91, both hemispheres 347.0
2201 Male, age 74, unknown 329.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 477.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 477.7
Samples: 152

Max nTPM: 1177.9
Min nTPM: 149.2
Std nTPM: 143.9
Median nTPM: 452.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1177.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 918.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 908.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 905.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 862.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 845.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 757.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 756.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 755.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 721.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 706.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 704.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 698.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 648.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 646.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 633.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 621.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 621.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 618.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 603.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 602.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 599.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 591.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 582.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 582.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 581.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 572.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 572.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 569.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 562.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 562.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 561.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 553.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 549.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 545.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 544.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 540.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 538.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 535.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 534.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 533.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 531.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 531.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 531.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 521.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 518.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 517.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 509.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 509.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 503.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 502.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 502.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 501.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 499.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 499.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 498.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 497.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 492.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 491.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 491.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 490.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 489.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 487.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 486.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 484.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 484.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 482.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 473.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 472.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 471.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 467.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 465.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 460.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 460.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 458.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 452.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 452.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 450.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 448.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 448.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 448.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 445.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 439.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 439.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 432.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 431.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 427.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 427.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 426.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 425.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 418.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 417.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 416.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 411.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 410.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 405.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 405.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 404.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 404.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 404.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 403.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 402.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 400.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 399.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 396.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 392.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 391.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 388.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 386.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 386.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 383.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 380.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 379.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 377.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 374.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 373.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 372.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 370.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 369.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 368.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 368.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 363.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 363.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 362.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 359.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 357.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 357.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 354.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 354.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 354.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 352.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 351.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 350.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 348.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 347.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 345.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 343.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 342.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 336.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 333.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 328.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 328.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 327.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 322.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 317.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 316.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 303.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 289.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 284.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 255.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 229.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 149.2
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 11.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 11.4
FF:10151-102I7 76 years, female 11.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 213.2
Pig sample Sample description nTPM
Amygdala
nTPM: 213.2
Samples: 4

Max nTPM: 266.8
Min nTPM: 147.9
Sample A Female 266.8
Sample B Female 229.3
Sample C Male 208.9
Sample D Male 147.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 618.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 618.7
Samples: 4

Max nTPM: 660.6
Min nTPM: 596.3
Sample A Male 602.7
Sample B Male 615.1
Sample C Female 660.6
Sample D Female 596.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 13.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 13.9
69095958 Antisense, RP_050324_02_E07, Mouse strain C57BL/6J (56 days, male) 13.9

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