BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:24.5 nTPM
HPA:24.5 nTPM
GTEx:42.2 nTPM
FANTOM5:75.7 Scaled Tags Per Million

CAUDATE - Antibody stainingi
Antibody HPA034940
Glial cells Not detected
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 24.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 7.7
1857 Female, age 85, left hemisphere 13.8
2290 Female, age 72, unknown 12.6
1854 Male, age 80, left hemisphere 10.5
1781 Male, age 74, unknown 8.4
2288 Male, age 75, left hemisphere 6.4
2289 Male, age 61, right hemisphere 3.7
2846 Female, age 79, unknown 3.1
2481 Female, age 94, left hemisphere 3.0
Claustrum
nTPM: 10.0
2568 Male, age 61, both hemispheres 14.1
2196 Female, age 79, unknown 13.4
2284 Female, age 91, both hemispheres 12.0
2392 Female, age 94, both hemispheres 10.6
2491 Male, age 75, both hemispheres 10.1
2292 Female, age 85, both hemispheres 8.5
2198 Male, age 80, both hemispheres 8.4
1956 Male, age 74, unknown 6.5
2645 Female, age 72, unknown 6.3
Globus pallidus, externus
nTPM: 0.2
2395 Male, age 75, both hemispheres 0.7
2772 Female, age 79, unknown 0.4
1996 Male, age 80, right hemisphere 0.0
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
Globus pallidus, internus
nTPM: 0.3
2566 Female, age 72, unknown 1.1
2287 Male, age 75, right hemisphere 0.6
2483 Female, age 94, right hemisphere 0.6
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 14.2
1856 Female, age 91, right hemisphere 27.6
2732 Male, age 80, right hemisphere 16.4
1806 Female, age 85, left hemisphere 15.9
1783 Male, age 74, unknown 15.2
2698 Female, age 72, unknown 14.4
2824 Male, age 61, right hemisphere 13.8
2286 Male, age 75, left hemisphere 8.6
2391 Female, age 94, left hemisphere 1.4
Nucleus basalis of Meynert
nTPM: 2.4
2821 Male, age 75, both hemispheres 6.3
2393 Male, age 80, right hemisphere 1.9
2484 Female, age 94, left hemisphere 1.5
2569 Male, age 61, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 24.5
1979 Male, age 74, unknown 39.1
1812 Female, age 91, both hemispheres 27.7
2195 Female, age 85, both hemispheres 19.4
2775 Male, age 80, right hemisphere 19.0
2029 Male, age 61, right hemisphere 17.3
Olfactory tubercle
nTPM: 17.7
2487 Female, age 94, left hemisphere 21.2
1846 Male, age 80, right hemisphere 20.3
1998 Female, age 91, both hemispheres 20.1
2856 Male, age 75, right hemisphere 9.2
Putamen
nTPM: 3.6
1937 Female, age 91, right hemisphere 12.6
1838 Male, age 80, right hemisphere 7.8
2466 Female, age 79, unknown 2.5
2482 Female, age 94, left hemisphere 1.7
1829 Male, age 74, unknown 0.4
2489 Female, age 72, unknown 0.0
2647 Male, age 75, left hemisphere 0.0
Septal nuclei
nTPM: 20.5
2009 Female, age 91, both hemispheres 28.4
2199 Male, age 80, right hemisphere 23.5
2031 Female, age 72, unknown 20.5
1960 Male, age 74, unknown 20.2
2394 Male, age 61, left hemisphere 19.3
2059 Female, age 85, both hemispheres 15.9
2629 Female, age 94, right hemisphere 15.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 42.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 18.6
Samples: 246

Max nTPM: 89.1
Min nTPM: 2.3
Std nTPM: 13.6
Median nTPM: 15.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 89.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 63.4
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 59.1
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 58.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 57.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 56.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 54.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 52.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 52.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 52.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 50.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 42.2
Samples: 246

Max nTPM: 533.5
Min nTPM: 2.9
Std nTPM: 39.7
Median nTPM: 40.4
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 533.5
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 122.4
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 120.9
GTEX-XLM4-0011-R6A-SM-4AT4B 60-69 years, male 111.2
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 97.2
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 89.6
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 86.7
GTEX-13OVL-0011-R6a-SM-5L3G4 50-59 years, male 83.7
GTEX-14PJM-0011-R6a-SM-6872G 50-59 years, female 83.3
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 82.9
GTEX-14JIY-0011-R6b-SM-68714 60-69 years, male 81.7
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Brain - Putamen (basal ganglia)
Average nTPM: 10.3
Samples: 205

Max nTPM: 68.9
Min nTPM: 1.6
Std nTPM: 8.5
Median nTPM: 8.3
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 68.9
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 46.2
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 46.1
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 37.4
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 35.2
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 34.3
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 34.2
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 31.8
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 27.7
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 27.0
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 25.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 75.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 54.0
FF:10164-103B2 76 years, female 54.0
Globus pallidus
Scaled Tags Per Million: 16.6
FF:10175-103C4 60 years, female 28.4
FF:10161-103A8 76 years, female 4.8
Nucleus accumbens
Scaled Tags Per Million: 50.1
FF:10037-101F1 23-56 years, mixed 50.1
Putamen
Scaled Tags Per Million: 75.7
FF:10176-103C5 60 years, female 75.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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