MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:35.4 nTPM
HPA:35.4 nTPM
GTEx:33.1 nTPM
FANTOM5:71.8 Scaled Tags Per Million
Pig:49.0 nTPM
Mouse:12.2 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 35.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.8
2019 Male, age 18, unknown 37.3
2586 Male, age 75, left hemisphere 35.3
2411 Female, age 72, unknown 35.2
1833 Male, age 53, unknown 32.6
1827 Male, age 72, unknown 32.0
1830 Male, age 51, unknown 31.6
2666 Male, age 74, left hemisphere 31.6
1870 Female, age 42, unknown 31.5
2828 Female, age 72, unknown 30.6
2219 Male, age 76, both hemispheres 30.0
Dorsal raphe nucleus
nTPM: 31.9
1828 Male, age 53, unknown 33.1
2750 Male, age 76, both hemispheres 33.1
2047 Male, age 72, unknown 32.8
2298 Female, age 72, unknown 30.4
2016 Female, age 72, unknown 30.3
Inferior colliculus
nTPM: 31.3
2097 Female, age 72, unknown 34.6
1890 Male, age 53, unknown 33.0
1848 Female, age 42, unknown 31.0
2849 Male, age 72, unknown 26.5
Median raphe nucleus
nTPM: 32.9
2220 Male, age 76, midline 32.9
Pedunculopontine tegmental nucleus
nTPM: 31.3
1921 Female, age 85, both hemispheres 34.3
2334 Male, age 80, both hemispheres 31.5
2338 Male, age 61, both hemispheres 28.1
Periaquaductal grey, anterior
nTPM: 32.1
2502 Female, age 75, unknown 34.3
1947 Male, age 18, unknown 33.1
1795 Male, age 51, unknown 29.1
Periaquaductal grey, dorsal
nTPM: 29.3
2464 Female, age 72, unknown 31.2
1840 Male, age 53, unknown 29.8
1831 Male, age 72, unknown 28.5
2850 Male, age 76, both hemispheres 27.6
Periaquaductal grey, lateral
nTPM: 26.6
2053 Male, age 18, unknown 28.2
2272 Male, age 74, both hemispheres 26.1
2140 Male, age 76, both hemispheres 25.4
Pretectal area
nTPM: 33.4
1816 Male, age 51, unknown 38.4
2007 Male, age 72, unknown 38.0
1817 Female, age 42, unknown 37.4
1944 Female, age 72, unknown 37.4
1815 Male, age 53, unknown 35.8
2667 Female, age 75, unknown 33.4
2407 Male, age 75, both hemispheres 30.3
2224 Female, age 72, unknown 29.8
2273 Male, age 74, both hemispheres 29.6
2316 Male, age 76, right hemisphere 29.3
2825 Male, age 18, unknown 28.3
Red nucleus
nTPM: 34.7
1821 Female, age 72, unknown 40.5
1954 Female, age 42, unknown 38.5
2503 Female, age 72, unknown 35.1
1904 Male, age 53, unknown 34.7
1865 Male, age 51, unknown 34.4
2785 Male, age 18, unknown 34.3
2227 Male, age 72, unknown 33.9
2769 Male, age 72, unknown 33.4
2823 Male, age 76, right hemisphere 33.2
2725 Female, age 75, unknown 33.1
2584 Male, age 75, left hemisphere 32.4
2588 Male, age 74, left hemisphere 32.4
Substantia nigra
nTPM: 35.4
2241 Male, age 72, unknown 42.4
1889 Female, age 72, unknown 38.0
1851 Male, age 51, unknown 37.2
1916 Female, age 42, unknown 37.2
2409 Female, age 72, unknown 37.2
1941 Male, age 53, unknown 34.3
2583 Male, age 75, right hemisphere 33.4
2699 Male, age 18, unknown 32.3
2665 Male, age 74, both hemispheres 31.2
2590 Female, age 75, unknown 31.0
Superior colliculus
nTPM: 32.0
2664 Male, age 75, both hemispheres 35.8
2668 Female, age 75, unknown 34.9
2087 Female, age 72, unknown 34.8
2261 Male, age 18, unknown 32.7
1895 Male, age 76, right hemisphere 31.3
2587 Male, age 74, left hemisphere 31.3
1913 Female, age 42, unknown 30.5
1995 Male, age 72, unknown 29.9
1839 Male, age 51, unknown 29.6
1796 Male, age 53, unknown 29.3
Ventral tegmental area
nTPM: 33.4
2410 Female, age 72, unknown 37.1
1942 Male, age 51, unknown 33.8
2218 Male, age 76, both hemispheres 33.7
1915 Female, age 42, unknown 33.6
2223 Female, age 72, unknown 31.5
2021 Male, age 53, unknown 30.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 33.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 33.1
Samples: 139

Max nTPM: 54.9
Min nTPM: 22.8
Std nTPM: 6.4
Median nTPM: 31.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 54.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 53.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 52.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 50.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 49.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 47.7
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 47.1
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 44.9
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 44.6
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 44.3
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 44.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 71.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 71.8
FF:10158-103A5 76 years, female 71.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 49.0
Pig sample Sample description nTPM
Midbrain
nTPM: 47.6
Samples: 4

Max nTPM: 53.2
Min nTPM: 37.5
Sample A Female 51.8
Sample B Female 47.9
Sample C Male 53.2
Sample D Male 37.5
Periaqueductal gray
nTPM: 40.5
Samples: 3

Max nTPM: 43.9
Min nTPM: 38.4
Sample B Female 43.9
Sample C Male 38.4
Sample D Male 39.1
Substantia nigra
nTPM: 46.8
Samples: 4

Max nTPM: 63.3
Min nTPM: 38.1
Sample A Female 63.3
Sample B Female 46.6
Sample C Male 39.0
Sample D Male 38.1
Superior colliculi
nTPM: 49.0
Samples: 4

Max nTPM: 59.8
Min nTPM: 34.5
Sample A Female 52.3
Sample B Female 49.2
Sample C Male 59.8
Sample D Male 34.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 12.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 12.2
Samples: 4

Max nTPM: 12.5
Min nTPM: 11.9
Sample A Male 12.1
Sample B Male 11.9
Sample C Female 12.5
Sample D Female 12.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
69134444 Antisense, RP_050321_02_H09, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.