BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:4.9 nTPM
HPA:4.9 nTPM
GTEx:18.5 nTPM
FANTOM5:46.4 Scaled Tags Per Million
Mouse:39.8 nTPM
Allen mouse:10.9 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA035491
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 4.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 4.6
2846 Female, age 79, unknown 6.5
2290 Female, age 72, unknown 5.7
1854 Male, age 80, left hemisphere 5.2
1857 Female, age 85, left hemisphere 5.1
2289 Male, age 61, right hemisphere 5.1
1781 Male, age 74, unknown 4.0
2288 Male, age 75, left hemisphere 2.8
2481 Female, age 94, left hemisphere 2.4
Claustrum
nTPM: 2.4
2645 Female, age 72, unknown 3.1
2568 Male, age 61, both hemispheres 2.7
2196 Female, age 79, unknown 2.6
2284 Female, age 91, both hemispheres 2.6
2392 Female, age 94, both hemispheres 2.5
2491 Male, age 75, both hemispheres 2.5
2198 Male, age 80, both hemispheres 2.1
2292 Female, age 85, both hemispheres 1.9
1956 Male, age 74, unknown 1.8
Globus pallidus, externus
nTPM: 1.1
2646 Male, age 61, right hemisphere 2.2
2395 Male, age 75, both hemispheres 1.2
2567 Female, age 72, unknown 0.8
1996 Male, age 80, right hemisphere 0.7
2772 Female, age 79, unknown 0.6
Globus pallidus, internus
nTPM: 0.9
2483 Female, age 94, right hemisphere 1.8
2287 Male, age 75, right hemisphere 1.0
2566 Female, age 72, unknown 0.8
2111 Female, age 85, right hemisphere 0.7
2778 Female, age 91, both hemispheres 0.7
1818 Male, age 74, unknown 0.6
2037 Male, age 80, right hemisphere 0.6
Nucleus accumbens
nTPM: 4.3
1783 Male, age 74, unknown 5.7
1806 Female, age 85, left hemisphere 5.6
2824 Male, age 61, right hemisphere 5.4
2698 Female, age 72, unknown 5.0
1856 Female, age 91, right hemisphere 4.7
2286 Male, age 75, left hemisphere 3.4
2391 Female, age 94, left hemisphere 2.5
2732 Male, age 80, right hemisphere 2.5
Nucleus basalis of Meynert
nTPM: 3.4
2484 Female, age 94, left hemisphere 4.4
2393 Male, age 80, right hemisphere 4.1
2569 Male, age 61, both hemispheres 2.5
2821 Male, age 75, both hemispheres 2.5
Nucleus of the diagonal band
nTPM: 3.1
1979 Male, age 74, unknown 4.0
2195 Female, age 85, both hemispheres 3.5
2775 Male, age 80, right hemisphere 2.9
2029 Male, age 61, right hemisphere 2.7
1812 Female, age 91, both hemispheres 2.4
Olfactory tubercle
nTPM: 2.9
1998 Female, age 91, both hemispheres 3.1
1846 Male, age 80, right hemisphere 3.0
2856 Male, age 75, right hemisphere 2.9
2487 Female, age 94, left hemisphere 2.7
Putamen
nTPM: 4.9
2466 Female, age 79, unknown 6.4
1838 Male, age 80, right hemisphere 6.3
1829 Male, age 74, unknown 5.5
2489 Female, age 72, unknown 5.5
1937 Female, age 91, right hemisphere 4.3
2647 Male, age 75, left hemisphere 3.5
2482 Female, age 94, left hemisphere 2.8
Septal nuclei
nTPM: 2.7
2031 Female, age 72, unknown 3.7
1960 Male, age 74, unknown 3.4
2059 Female, age 85, both hemispheres 3.1
2629 Female, age 94, right hemisphere 2.7
2009 Female, age 91, both hemispheres 2.4
2394 Male, age 61, left hemisphere 2.1
2199 Male, age 80, right hemisphere 1.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 18.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 13.5
Samples: 246

Max nTPM: 33.3
Min nTPM: 2.5
Std nTPM: 5.5
Median nTPM: 13.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 33.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 28.8
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 24.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 23.8
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 23.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 23.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 22.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 22.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 22.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 22.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 22.6
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 18.5
Samples: 246

Max nTPM: 45.6
Min nTPM: 0.9
Std nTPM: 8.0
Median nTPM: 18.6
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 45.6
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 37.6
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 36.7
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 36.0
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 35.6
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 35.4
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 34.1
GTEX-13O3O-0011-R6b-SM-5P9GY 60-69 years, female 33.6
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 33.4
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 32.8
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 32.8
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 14.6
Samples: 205

Max nTPM: 33.5
Min nTPM: 1.4
Std nTPM: 6.7
Median nTPM: 14.4
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 33.5
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 33.4
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 30.6
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 27.9
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 27.6
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 27.2
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 27.1
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 26.7
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 26.2
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 25.5
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 25.4
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 46.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 30.3
FF:10164-103B2 76 years, female 30.3
Globus pallidus
Scaled Tags Per Million: 8.8
FF:10175-103C4 60 years, female 12.6
FF:10161-103A8 76 years, female 5.0
Nucleus accumbens
Scaled Tags Per Million: 24.7
FF:10037-101F1 23-56 years, mixed 24.7
Putamen
Scaled Tags Per Million: 46.4
FF:10176-103C5 60 years, female 46.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 39.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 39.8
Samples: 4

Max nTPM: 44.8
Min nTPM: 36.9
Sample A Male 39.7
Sample B Male 44.8
Sample C Female 37.6
Sample D Female 36.9
Septum
nTPM: 18.3
Samples: 4

Max nTPM: 20.6
Min nTPM: 17.1
Sample A Male 18.0
Sample B Male 20.6
Sample C Female 17.1
Sample D Female 17.6
Ventral forebrain
nTPM: 27.2
Samples: 4

Max nTPM: 29.7
Min nTPM: 24.7
Sample A Male 29.2
Sample B Male 24.7
Sample C Female 25.0
Sample D Female 29.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 10.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 10.9
67870468 Antisense, RP_041018_01_D10, Mouse strain C57BL/6J (56 days, male) 10.9
68203449 Antisense, RP_041018_01_D10, Mouse strain C57BL/6J (56 days, male) 8.4
Pallidum
Expression energy: 3.4
68203449 Antisense, RP_041018_01_D10, Mouse strain C57BL/6J (56 days, male) 3.4
67870468 Antisense, RP_041018_01_D10, Mouse strain C57BL/6J (56 days, male) 2.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.