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BRAIN HIPPOCAMPUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
HIPPOCAMPUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:234.9 nTPM
GTEx:447.4 nTPM
FANTOM5:276.3 Scaled Tags Per Million

HIPPOCAMPUS - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPUS - HPA Brain RNA-seq
Avg nTPM 234.9
Sample id Sample description nTPM
Hippocampus
nTPM: 234.9
2621 Female, age 67, right hemisphere 374.6
2148 Female, age 91, left hemisphere 253.0
1855 Male, age 76, left hemisphere 217.2
1911 Female, age 85, right hemisphere 214.0
1898 Male, age 80, left hemisphere 190.5
2529 Female, age 94, left hemisphere 160.1

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 447.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 447.4
Samples: 197

Max nTPM: 1909.6
Min nTPM: 22.1
Std nTPM: 329.8
Median nTPM: 388.2
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 1909.6
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 1566.3
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 1531.6
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 1323.1
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 1321.5
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 1222.2
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 1189.5
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 1142.9
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 1112.8
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 1099.6
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 1072.5
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 1051.9
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 1017.1
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 989.7
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 963.0
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 944.1
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 940.1
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 916.9
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 916.0
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 907.1
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 860.2
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 853.6
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 844.5
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 839.1
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 825.8
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 816.6
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 812.0
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 808.6
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 792.7
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 783.3
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 762.9
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 761.7
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 755.6
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 731.4
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 724.7
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 718.7
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 711.8
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 687.3
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 670.6
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 659.7
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 656.6
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 655.0
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 651.9
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 642.5
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 638.8
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 635.0
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 633.8
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 628.4
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 626.5
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 625.8
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 622.1
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 616.2
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 610.9
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 586.5
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 575.5
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 572.7
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 564.8
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 564.3
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 559.3
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 548.4
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 548.4
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 539.7
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 538.9
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 537.7
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 535.9
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 532.5
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 530.5
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 527.2
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 513.6
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 507.2
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 505.4
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 504.8
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 490.3
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 488.1
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 486.0
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 485.4
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 483.2
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 480.6
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 466.7
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 465.1
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 465.0
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 463.6
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 459.5
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 459.4
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 454.6
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 454.0
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 453.8
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 447.9
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 445.3
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 440.3
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 433.9
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 426.8
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 419.6
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 415.5
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 410.3
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 406.9
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 397.0
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 394.4
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 388.2
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 383.8
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 374.8
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 366.7
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 365.6
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 362.0
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 359.6
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 357.8
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 340.4
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 337.5
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 337.1
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 336.0
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 333.1
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 325.4
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 322.1
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 309.3
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 307.5
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 304.8
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 297.1
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 292.8
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 288.4
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 287.3
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 286.0
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 285.2
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 279.4
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 279.2
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 278.9
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 272.7
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 265.7
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 263.7
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 263.0
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 260.3
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 256.6
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 254.4
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 239.9
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 233.3
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 228.4
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 212.0
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 200.9
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 198.6
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 196.0
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 195.9
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 190.2
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 190.2
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 187.8
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 180.7
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 177.7
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 175.9
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 172.4
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 171.1
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 169.9
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 168.3
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 164.2
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 163.3
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 161.3
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 160.6
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 158.4
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 157.5
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 157.0
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 155.4
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 150.3
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 147.7
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 144.3
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 141.9
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 138.4
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 137.0
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 136.5
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 133.8
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 131.8
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 128.0
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 127.8
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 127.5
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 127.0
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 126.2
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 120.2
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 118.8
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 118.8
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 118.7
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 116.2
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 114.4
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 106.9
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 105.9
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 99.3
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 97.2
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 94.8
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 94.3
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 83.3
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 77.4
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 75.7
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 73.0
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 69.6
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 67.6
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 66.6
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 57.4
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 48.0
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 39.8
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 39.0
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 28.0
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 22.1
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 276.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 276.3
FF:10169-103B7 60 years, female 381.9
FF:10153-102I9 76 years, female 170.8

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