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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:121.7 nTPM
HPA:121.7 nTPM
GTEx:95.0 nTPM
FANTOM5:87.8 Scaled Tags Per Million
Mouse:163.9 nTPM

AMYGDALA - HPA Brain RNA-seq
Max nTPM 121.7
Sample id Sample description nTPM
Amygdala
nTPM: 118.6
2695 Female, age 67, right hemisphere 125.0
2814 Male, age 76, right hemisphere 122.7
2517 Female, age 94, left hemisphere 117.3
2514 Male, age 75, right hemisphere 116.8
1987 Female, age 91, left hemisphere 111.1
Basal amygdala
nTPM: 120.2
2609 Male, age 75, right hemisphere 126.1
2685 Female, age 94, left hemisphere 122.8
2243 Female, age 91, right hemisphere 119.3
2827 Female, age 67, right hemisphere 119.1
2110 Male, age 80, left hemisphere 118.2
1955 Male, age 76, both hemispheres 115.6
Central amygdala
nTPM: 121.7
2826 Female, age 94, left hemisphere 133.7
2515 Male, age 75, right hemisphere 123.8
1905 Male, age 76, both hemispheres 119.9
2239 Male, age 80, left hemisphere 117.4
2701 Female, age 91, right hemisphere 113.5
Corticomedial amygdala
nTPM: 115.7
2829 Male, age 80, left hemisphere 119.6
2242 Female, age 91, right hemisphere 119.1
2428 Male, age 75, right hemisphere 118.7
2535 Female, age 67, right hemisphere 113.8
2240 Male, age 76, both hemispheres 112.3
2429 Female, age 94, left hemisphere 110.9
Lateral amygdala
nTPM: 121.5
2534 Female, age 94, left hemisphere 130.3
2256 Male, age 80, left hemisphere 122.4
2516 Male, age 75, right hemisphere 120.8
2830 Female, age 67, right hemisphere 119.6
1883 Male, age 76, both hemispheres 118.2
2255 Female, age 91, right hemisphere 117.4
Stria terminalis, bed nucleus
nTPM: 107.8
1974 Female, age 91, both hemispheres 109.7
2486 Female, age 94, both hemispheres 107.1
2201 Male, age 74, unknown 106.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 95.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 95.0
Samples: 152

Max nTPM: 149.4
Min nTPM: 55.6
Std nTPM: 14.2
Median nTPM: 93.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 149.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 126.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 123.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 122.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 122.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 121.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 120.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 118.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 117.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 116.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 116.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 115.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 114.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 114.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 113.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 113.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 113.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 113.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 112.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 111.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 111.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 109.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 109.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 109.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 109.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 109.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 109.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 108.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 107.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 106.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 106.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 105.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 105.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 105.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 105.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 105.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 105.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 104.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 103.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 103.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 103.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 103.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 103.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 103.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 102.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 102.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 102.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 102.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 102.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 101.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 100.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 100.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 100.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 100.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 100.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 99.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 99.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 99.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 98.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 98.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 98.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 98.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 97.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 97.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 97.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 96.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 95.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 95.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 95.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 94.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 94.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 94.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 94.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 93.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 93.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 93.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 93.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 92.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 92.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 92.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 92.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 91.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 91.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 91.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 90.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 90.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 90.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 90.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 90.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 90.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 90.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 90.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 90.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 90.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 90.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 90.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 90.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 89.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 89.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 89.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 89.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 89.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 89.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 89.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 88.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 87.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 87.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 87.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 87.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 87.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 87.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 87.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 86.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 86.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 86.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 86.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 86.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 85.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 85.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 84.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 84.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 84.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 84.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 83.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 82.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 82.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 81.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 81.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 81.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 80.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 80.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 80.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 80.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 79.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 79.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 79.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 78.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 77.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 76.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 75.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 75.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 74.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 73.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 73.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 72.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 70.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 69.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 67.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 66.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 64.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 63.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 55.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 87.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 87.8
FF:10151-102I7 76 years, female 87.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 163.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 164.0
Samples: 4

Max nTPM: 175.8
Min nTPM: 155.2
Sample A Male 164.2
Sample B Male 160.6
Sample C Female 175.8
Sample D Female 155.2

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