MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:121.0 nTPM
HPA:121.0 nTPM
GTEx:95.8 nTPM
FANTOM5:83.9 Scaled Tags Per Million
Mouse:101.8 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 121.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 119.9
2586 Male, age 75, left hemisphere 142.8
2666 Male, age 74, left hemisphere 123.6
2828 Female, age 72, unknown 122.4
2019 Male, age 18, unknown 120.0
1827 Male, age 72, unknown 118.4
1833 Male, age 53, unknown 115.7
1870 Female, age 42, unknown 115.7
1830 Male, age 51, unknown 114.2
2411 Female, age 72, unknown 113.5
2219 Male, age 76, both hemispheres 113.1
Dorsal raphe nucleus
nTPM: 112.8
1828 Male, age 53, unknown 115.1
2047 Male, age 72, unknown 114.9
2750 Male, age 76, both hemispheres 114.4
2298 Female, age 72, unknown 110.4
2016 Female, age 72, unknown 109.4
Inferior colliculus
nTPM: 113.1
2849 Male, age 72, unknown 116.5
1890 Male, age 53, unknown 114.1
1848 Female, age 42, unknown 113.1
2097 Female, age 72, unknown 108.7
Median raphe nucleus
nTPM: 114.3
2220 Male, age 76, midline 114.3
Pedunculopontine tegmental nucleus
nTPM: 112.1
2334 Male, age 80, both hemispheres 114.5
2338 Male, age 61, both hemispheres 113.5
1921 Female, age 85, both hemispheres 108.2
Periaquaductal grey, anterior
nTPM: 117.7
2502 Female, age 75, unknown 119.7
1795 Male, age 51, unknown 117.9
1947 Male, age 18, unknown 115.6
Periaquaductal grey, dorsal
nTPM: 111.3
2850 Male, age 76, both hemispheres 112.8
1840 Male, age 53, unknown 112.1
1831 Male, age 72, unknown 110.3
2464 Female, age 72, unknown 110.0
Periaquaductal grey, lateral
nTPM: 107.4
2140 Male, age 76, both hemispheres 108.2
2272 Male, age 74, both hemispheres 107.3
2053 Male, age 18, unknown 106.6
Pretectal area
nTPM: 115.8
1817 Female, age 42, unknown 126.8
1816 Male, age 51, unknown 125.0
1944 Female, age 72, unknown 122.8
2007 Male, age 72, unknown 121.5
1815 Male, age 53, unknown 120.8
2667 Female, age 75, unknown 118.4
2407 Male, age 75, both hemispheres 113.7
2825 Male, age 18, unknown 111.2
2224 Female, age 72, unknown 106.4
2273 Male, age 74, both hemispheres 105.1
2316 Male, age 76, right hemisphere 101.7
Red nucleus
nTPM: 118.8
2584 Male, age 75, left hemisphere 130.1
2785 Male, age 18, unknown 124.4
2588 Male, age 74, left hemisphere 120.8
2769 Male, age 72, unknown 120.6
1865 Male, age 51, unknown 119.2
1904 Male, age 53, unknown 118.2
2227 Male, age 72, unknown 117.3
1821 Female, age 72, unknown 116.7
1954 Female, age 42, unknown 116.2
2503 Female, age 72, unknown 115.9
2823 Male, age 76, right hemisphere 113.7
2725 Female, age 75, unknown 112.9
Substantia nigra
nTPM: 121.0
1916 Female, age 42, unknown 132.5
2583 Male, age 75, right hemisphere 127.3
1851 Male, age 51, unknown 126.6
2665 Male, age 74, both hemispheres 126.0
2699 Male, age 18, unknown 122.1
1889 Female, age 72, unknown 120.8
1941 Male, age 53, unknown 120.6
2590 Female, age 75, unknown 116.5
2241 Male, age 72, unknown 109.5
2409 Female, age 72, unknown 108.4
Superior colliculus
nTPM: 117.6
2664 Male, age 75, both hemispheres 132.1
2668 Female, age 75, unknown 122.3
2087 Female, age 72, unknown 119.7
1995 Male, age 72, unknown 118.4
2261 Male, age 18, unknown 117.3
1796 Male, age 53, unknown 116.8
1913 Female, age 42, unknown 116.8
1839 Male, age 51, unknown 113.1
2587 Male, age 74, left hemisphere 110.6
1895 Male, age 76, right hemisphere 109.3
Ventral tegmental area
nTPM: 118.2
2410 Female, age 72, unknown 124.8
1915 Female, age 42, unknown 120.9
2218 Male, age 76, both hemispheres 119.6
2223 Female, age 72, unknown 118.8
2021 Male, age 53, unknown 112.7
1942 Male, age 51, unknown 112.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 95.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 95.8
Samples: 139

Max nTPM: 175.2
Min nTPM: 56.4
Std nTPM: 14.8
Median nTPM: 94.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 175.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 142.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 131.9
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 126.9
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 126.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 124.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 122.4
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 119.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 116.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 115.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 115.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 83.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 83.9
FF:10158-103A5 76 years, female 83.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 101.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 101.8
Samples: 4

Max nTPM: 107.3
Min nTPM: 94.9
Sample A Male 102.5
Sample B Male 102.5
Sample C Female 94.9
Sample D Female 107.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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