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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:139.7 nTPM
HPA:139.7 nTPM
GTEx:126.7 nTPM
FANTOM5:52.0 Scaled Tags Per Million
Pig:18.3 nTPM
Mouse:123.7 nTPM
Allen mouse:0.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 139.7
Sample id Sample description nTPM
Amygdala
nTPM: 138.2
2814 Male, age 76, right hemisphere 154.4
2695 Female, age 67, right hemisphere 138.7
1987 Female, age 91, left hemisphere 136.2
2517 Female, age 94, left hemisphere 133.0
2514 Male, age 75, right hemisphere 128.7
Basal amygdala
nTPM: 135.4
2243 Female, age 91, right hemisphere 139.3
2685 Female, age 94, left hemisphere 138.3
2609 Male, age 75, right hemisphere 137.3
2110 Male, age 80, left hemisphere 136.5
1955 Male, age 76, both hemispheres 136.3
2827 Female, age 67, right hemisphere 124.8
Central amygdala
nTPM: 139.7
1905 Male, age 76, both hemispheres 152.5
2826 Female, age 94, left hemisphere 140.9
2239 Male, age 80, left hemisphere 136.2
2515 Male, age 75, right hemisphere 135.5
2701 Female, age 91, right hemisphere 133.5
Corticomedial amygdala
nTPM: 134.5
2829 Male, age 80, left hemisphere 142.7
2242 Female, age 91, right hemisphere 138.8
2240 Male, age 76, both hemispheres 134.5
2429 Female, age 94, left hemisphere 133.2
2428 Male, age 75, right hemisphere 132.7
2535 Female, age 67, right hemisphere 124.9
Lateral amygdala
nTPM: 135.2
1883 Male, age 76, both hemispheres 147.7
2516 Male, age 75, right hemisphere 137.9
2534 Female, age 94, left hemisphere 137.2
2255 Female, age 91, right hemisphere 132.2
2256 Male, age 80, left hemisphere 128.9
2830 Female, age 67, right hemisphere 127.5
Stria terminalis, bed nucleus
nTPM: 133.5
1974 Female, age 91, both hemispheres 141.5
2201 Male, age 74, unknown 131.2
2486 Female, age 94, both hemispheres 127.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 126.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 126.7
Samples: 152

Max nTPM: 411.2
Min nTPM: 39.2
Std nTPM: 52.1
Median nTPM: 116.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 411.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 394.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 328.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 315.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 223.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 220.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 214.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 208.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 199.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 191.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 182.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 181.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 179.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 178.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 175.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 174.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 172.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 170.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 170.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 169.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 167.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 165.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 163.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 162.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 162.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 161.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 154.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 152.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 151.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 150.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 149.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 149.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 148.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 147.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 146.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 145.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 144.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 142.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 140.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 139.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 138.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 137.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 137.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 136.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 135.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 135.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 135.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 133.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 133.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 133.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 132.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 132.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 132.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 131.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 131.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 131.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 131.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 130.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 130.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 128.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 128.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 126.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 126.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 125.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 124.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 123.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 122.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 120.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 119.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 119.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 118.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 117.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 117.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 117.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 117.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 116.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 116.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 115.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 115.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 115.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 114.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 114.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 114.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 113.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 113.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 113.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 113.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 112.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 111.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 111.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 110.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 110.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 109.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 109.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 107.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 107.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 106.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 106.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 105.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 104.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 103.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 102.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 102.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 101.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 101.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 100.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 99.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 99.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 99.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 98.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 98.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 97.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 97.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 96.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 96.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 95.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 94.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 93.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 92.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 92.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 92.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 91.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 90.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 90.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 89.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 88.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 88.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 87.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 86.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 86.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 85.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 84.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 84.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 83.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 82.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 80.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 79.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 78.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 77.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 76.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 76.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 73.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 71.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 70.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 69.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 69.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 67.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 67.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 67.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 60.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 59.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 39.2
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 52.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 52.0
FF:10151-102I7 76 years, female 52.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 18.3
Pig sample Sample description nTPM
Amygdala
nTPM: 18.3
Samples: 4

Max nTPM: 26.1
Min nTPM: 14.5
Sample A Female 26.1
Sample B Female 15.5
Sample C Male 16.9
Sample D Male 14.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 123.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 123.7
Samples: 4

Max nTPM: 128.9
Min nTPM: 118.2
Sample A Male 123.6
Sample B Male 128.9
Sample C Female 124.0
Sample D Female 118.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.3
68844217 Antisense, RP_050222_01_B06, Mouse strain C57BL/6J (56 days, male) 0.3

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