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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:147.1 nTPM
HPA:147.1 nTPM
FANTOM5:63.6 Scaled Tags Per Million
Pig:39.7 nTPM
Allen mouse:0.1 Expression energy

PONS - HPA Brain RNA-seq
Max nTPM 147.1
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 136.4
2301 Female, age 85, both hemispheres 139.4
2188 Female, age 91, both hemispheres 136.7
2090 Male, age 80, both hemispheres 136.3
1984 Male, age 76, both hemispheres 133.1
Dorsal cochlear nucleus
nTPM: 140.0
2187 Female, age 91, both hemispheres 144.2
2058 Male, age 76, both hemispheres 143.6
2370 Male, age 61, both hemispheres 141.5
2802 Male, age 74, right hemisphere 141.0
2378 Male, age 80, both hemispheres 129.7
Dorsal tegmental nucleus
nTPM: 140.1
2083 Male, age 80, both hemispheres 141.4
2326 Male, age 74, both hemispheres 140.9
2358 Male, age 61, both hemispheres 140.8
1936 Male, age 76, left hemisphere 137.2
Dorsolateral tegmental area
nTPM: 140.4
2654 Male, age 80, both hemispheres 144.8
2751 Female, age 85, both hemispheres 143.0
2360 Male, age 74, both hemispheres 140.9
2141 Male, age 76, both hemispheres 136.8
2337 Male, age 61, both hemispheres 136.3
Kolliker-Fuse nucleus
nTPM: 140.0
2163 Male, age 80, both hemispheres 148.2
2793 Female, age 91, left hemisphere 136.3
2315 Male, age 76, right hemisphere 135.6
Lateral lemniscal nuclei
nTPM: 138.4
2169 Male, age 76, both hemispheres 145.6
2453 Male, age 74, right hemisphere 138.9
2746 Female, age 85, left hemisphere 138.6
2036 Male, age 80, both hemispheres 137.6
2320 Female, age 91, left hemisphere 131.5
Lateral parabrachial nucleus
nTPM: 138.3
2139 Female, age 85, right hemisphere 140.2
2013 Male, age 80, both hemispheres 139.6
2790 Male, age 61, both hemispheres 139.0
2792 Male, age 76, both hemispheres 134.6
Lateral vestibular nucleus
nTPM: 146.5
2184 Male, age 76, both hemispheres 150.7
2311 Male, age 80, both hemispheres 142.3
Locus coeruleus
nTPM: 147.1
2123 Female, age 91, both hemispheres 156.9
2014 Male, age 55, unknown 154.5
1980 Male, age 76, both hemispheres 148.1
2317 Female, age 72, unknown 144.7
2162 Male, age 80, both hemispheres 144.4
2720 Male, age 74, both hemispheres 142.6
2788 Male, age 74, unknown 138.2
Medial olivary nucleus
nTPM: 137.5
2138 Female, age 91, both hemispheres 141.6
1943 Male, age 61, both hemispheres 138.8
1962 Male, age 76, both hemispheres 134.9
2851 Male, age 80, both hemispheres 134.6
Medial parabrachial nucleus
nTPM: 142.7
2170 Female, age 91, both hemispheres 157.2
2156 Male, age 61, both hemispheres 142.5
2854 Male, age 80, both hemispheres 139.6
2463 Female, age 85, right hemisphere 138.8
2786 Male, age 76, both hemispheres 135.4
Medial periolivary nuclei
nTPM: 140.3
2063 Male, age 76, both hemispheres 152.9
2171 Female, age 85, both hemispheres 146.8
2791 Male, age 74, right hemisphere 140.6
2081 Male, age 80, both hemispheres 133.7
2458 Female, age 91, both hemispheres 127.4
Motor facial nucleus
nTPM: 138.5
2062 Male, age 76, both hemispheres 158.0
2126 Male, age 61, both hemispheres 139.0
2365 Male, age 74, right hemisphere 136.2
2697 Female, age 85, both hemispheres 134.2
2327 Male, age 80, both hemispheres 131.8
2795 Female, age 91, both hemispheres 131.5
Motor trigeminal nucleus
nTPM: 138.0
2335 Male, age 61, both hemispheres 142.8
2560 Male, age 74, both hemispheres 141.5
2309 Male, age 76, both hemispheres 138.9
2321 Female, age 91, both hemispheres 134.0
2079 Male, age 80, both hemispheres 132.7
Nuclei of the trapezoid body
nTPM: 143.5
2159 Male, age 61, both hemispheres 153.4
1983 Male, age 76, both hemispheres 153.0
2735 Female, age 85, both hemispheres 146.3
2166 Male, age 80, both hemispheres 136.3
2368 Female, age 91, both hemispheres 128.8
Paramedian reticular nucleus
nTPM: 145.9
2050 Female, age 85, both hemispheres 153.5
2313 Male, age 61, both hemispheres 149.4
2057 Male, age 80, both hemispheres 148.0
2052 Male, age 76, both hemispheres 132.8
Pontine nuclei
nTPM: 144.6
2787 Female, age 85, both hemispheres 154.5
1863 Male, age 55, unknown 154.0
1968 Male, age 76, left hemisphere 149.2
2109 Female, age 72, unknown 147.6
2727 Male, age 61, right hemisphere 145.9
2319 Female, age 91, both hemispheres 137.2
2454 Male, age 74, left hemisphere 136.3
2115 Male, age 80, left hemisphere 131.9
Pontine raphe nucleus
nTPM: 142.6
2122 Female, age 85, midline 143.1
2853 Male, age 76, midline 142.2
Posteroventral cochlear nucleus
nTPM: 139.3
2752 Female, age 85, both hemispheres 146.4
2371 Male, age 61, both hemispheres 142.3
2070 Male, age 76, both hemispheres 136.9
2135 Female, age 91, both hemispheres 136.1
2341 Male, age 80, both hemispheres 134.7
Principal sensory trigeminal nucleus
nTPM: 142.2
2158 Male, age 61, both hemispheres 152.0
2324 Male, age 76, both hemispheres 145.0
2008 Male, age 80, left hemisphere 139.0
2367 Female, age 91, left hemisphere 132.8
Reticular pontine nucleus, caudal
nTPM: 139.4
2092 Male, age 76, both hemispheres 143.8
2332 Male, age 80, right hemisphere 139.8
2559 Male, age 74, both hemispheres 138.5
2457 Female, age 91, both hemispheres 135.5
Reticular pontine nucleus, oral
nTPM: 138.4
1939 Male, age 80, both hemispheres 142.8
2167 Male, age 76, both hemispheres 141.9
2012 Female, age 85, both hemispheres 141.7
2366 Female, age 91, both hemispheres 135.0
2361 Male, age 74, both hemispheres 130.6
Reticulotegmental nucleus
nTPM: 140.3
2322 Female, age 91, both hemispheres 141.2
2325 Male, age 76, both hemispheres 140.8
2333 Male, age 80, both hemispheres 140.4
2452 Male, age 74, both hemispheres 138.9
Spinal trigeminal nucleus, oral
nTPM: 140.0
2737 Female, age 85, both hemispheres 144.1
2164 Male, age 80, both hemispheres 142.4
1978 Male, age 76, both hemispheres 133.3
Subcoeruleus area
nTPM: 139.1
2323 Female, age 91, left hemisphere 143.2
2369 Female, age 85, left hemisphere 138.8
1958 Male, age 80, both hemispheres 138.5
2089 Male, age 76, left hemisphere 137.7
2451 Male, age 74, both hemispheres 137.4
Superior olive
nTPM: 138.1
2020 Male, age 76, both hemispheres 144.8
1875 Female, age 85, both hemispheres 142.2
2364 Male, age 74, right hemisphere 139.1
2329 Male, age 80, right hemisphere 133.4
2561 Female, age 91, both hemispheres 130.9
Superior vestibular nucleus
nTPM: 144.0
2015 Male, age 80, both hemispheres 145.5
2383 Male, age 74, both hemispheres 144.2
2061 Male, age 76, both hemispheres 142.2
Ventral periolivary nuclei
nTPM: 138.4
2165 Male, age 80, both hemispheres 143.2
2130 Female, age 85, both hemispheres 141.5
2023 Male, age 76, both hemispheres 136.8
2794 Female, age 91, left hemisphere 132.3
Ventrolateral tegmental area, A5 NE cell group
nTPM: 136.3
2840 Female, age 85, both hemispheres 141.3
2449 Male, age 74, both hemispheres 138.6
2161 Male, age 80, both hemispheres 138.5
1959 Male, age 76, both hemispheres 137.4
2359 Male, age 61, both hemispheres 134.5
2456 Female, age 91, both hemispheres 127.3

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 63.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 63.6
FF:10182-103D2 60 years, female 67.9
FF:10165-103B3 76 years, female 59.3
Pons
Scaled Tags Per Million: 58.0
FF:10033-101E6 18-54 years, mixed 58.0

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 39.7
Pig sample Sample description nTPM
Pons
nTPM: 39.7
Samples: 4

Max nTPM: 47.2
Min nTPM: 28.4
Sample A Female 41.9
Sample B Female 28.4
Sample C Male 41.4
Sample D Male 47.2

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 0.1
68844217 Antisense, RP_050222_01_B06, Mouse strain C57BL/6J (56 days, male) 0.1

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by the Knut & Alice Wallenberg Foundation.