MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:113.9 nTPM
HPA:113.9 nTPM
GTEx:130.4 nTPM
FANTOM5:100.4 Scaled Tags Per Million
Pig:33.7 nTPM
Mouse:19.6 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 113.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 106.4
2586 Male, age 75, left hemisphere 124.0
2666 Male, age 74, left hemisphere 121.3
2019 Male, age 18, unknown 114.3
2411 Female, age 72, unknown 104.9
1830 Male, age 51, unknown 102.4
1870 Female, age 42, unknown 101.7
1833 Male, age 53, unknown 100.7
2219 Male, age 76, both hemispheres 98.7
1827 Male, age 72, unknown 98.2
2828 Female, age 72, unknown 97.6
Dorsal raphe nucleus
nTPM: 96.5
1828 Male, age 53, unknown 100.7
2750 Male, age 76, both hemispheres 100.6
2047 Male, age 72, unknown 99.5
2016 Female, age 72, unknown 91.7
2298 Female, age 72, unknown 89.9
Inferior colliculus
nTPM: 99.4
1890 Male, age 53, unknown 101.5
2849 Male, age 72, unknown 99.7
1848 Female, age 42, unknown 99.1
2097 Female, age 72, unknown 97.6
Median raphe nucleus
nTPM: 94.3
2220 Male, age 76, midline 94.3
Pedunculopontine tegmental nucleus
nTPM: 99.1
2334 Male, age 80, both hemispheres 100.9
2338 Male, age 61, both hemispheres 98.2
1921 Female, age 85, both hemispheres 98.1
Periaquaductal grey, anterior
nTPM: 96.8
1947 Male, age 18, unknown 97.1
2502 Female, age 75, unknown 97.1
1795 Male, age 51, unknown 96.1
Periaquaductal grey, dorsal
nTPM: 91.7
1831 Male, age 72, unknown 94.9
2464 Female, age 72, unknown 94.6
1840 Male, age 53, unknown 90.2
2850 Male, age 76, both hemispheres 87.0
Periaquaductal grey, lateral
nTPM: 89.1
2053 Male, age 18, unknown 91.5
2272 Male, age 74, both hemispheres 88.0
2140 Male, age 76, both hemispheres 87.7
Pretectal area
nTPM: 98.3
2007 Male, age 72, unknown 110.5
1817 Female, age 42, unknown 105.8
1815 Male, age 53, unknown 103.7
1944 Female, age 72, unknown 103.5
1816 Male, age 51, unknown 103.4
2407 Male, age 75, both hemispheres 100.3
2316 Male, age 76, right hemisphere 95.7
2825 Male, age 18, unknown 93.6
2224 Female, age 72, unknown 89.3
2667 Female, age 75, unknown 89.3
2273 Male, age 74, both hemispheres 86.2
Red nucleus
nTPM: 113.9
2588 Male, age 74, left hemisphere 135.9
2725 Female, age 75, unknown 121.2
2503 Female, age 72, unknown 119.9
2584 Male, age 75, left hemisphere 117.9
2785 Male, age 18, unknown 113.9
1865 Male, age 51, unknown 110.3
1904 Male, age 53, unknown 110.2
1954 Female, age 42, unknown 108.5
2769 Male, age 72, unknown 108.5
2823 Male, age 76, right hemisphere 108.4
1821 Female, age 72, unknown 106.2
2227 Male, age 72, unknown 105.8
Substantia nigra
nTPM: 103.3
2583 Male, age 75, right hemisphere 108.5
1889 Female, age 72, unknown 105.5
2590 Female, age 75, unknown 105.1
1941 Male, age 53, unknown 104.6
1851 Male, age 51, unknown 104.3
1916 Female, age 42, unknown 102.7
2409 Female, age 72, unknown 102.6
2665 Male, age 74, both hemispheres 102.2
2241 Male, age 72, unknown 98.9
2699 Male, age 18, unknown 98.7
Superior colliculus
nTPM: 100.0
2668 Female, age 75, unknown 104.5
1895 Male, age 76, right hemisphere 102.4
2087 Female, age 72, unknown 101.7
2587 Male, age 74, left hemisphere 101.6
1913 Female, age 42, unknown 100.1
1839 Male, age 51, unknown 99.8
2664 Male, age 75, both hemispheres 98.3
1796 Male, age 53, unknown 97.8
1995 Male, age 72, unknown 97.6
2261 Male, age 18, unknown 96.6
Ventral tegmental area
nTPM: 100.4
2223 Female, age 72, unknown 106.2
2410 Female, age 72, unknown 103.2
1915 Female, age 42, unknown 101.2
2218 Male, age 76, both hemispheres 98.6
1942 Male, age 51, unknown 97.7
2021 Male, age 53, unknown 95.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 130.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 130.4
Samples: 139

Max nTPM: 429.4
Min nTPM: 32.8
Std nTPM: 61.5
Median nTPM: 112.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 429.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 373.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 319.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 271.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 269.3
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 267.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 259.2
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 258.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 240.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 234.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 228.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 100.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 100.4
FF:10158-103A5 76 years, female 100.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 33.7
Pig sample Sample description nTPM
Midbrain
nTPM: 25.0
Samples: 4

Max nTPM: 40.3
Min nTPM: 19.2
Sample A Female 20.0
Sample B Female 19.2
Sample C Male 20.4
Sample D Male 40.3
Periaqueductal gray
nTPM: 17.6
Samples: 3

Max nTPM: 20.1
Min nTPM: 13.3
Sample B Female 19.5
Sample C Male 20.1
Sample D Male 13.3
Substantia nigra
nTPM: 19.4
Samples: 4

Max nTPM: 29.0
Min nTPM: 13.6
Sample A Female 29.0
Sample B Female 13.6
Sample C Male 17.5
Sample D Male 17.4
Superior colliculi
nTPM: 33.7
Samples: 4

Max nTPM: 57.8
Min nTPM: 18.2
Sample A Female 57.8
Sample B Female 18.2
Sample C Male 32.4
Sample D Male 26.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 19.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 19.6
Samples: 4

Max nTPM: 21.9
Min nTPM: 17.8
Sample A Male 20.8
Sample B Male 17.8
Sample C Female 21.9
Sample D Female 17.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
69449026 Antisense, RP_050419_03_B04, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.