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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:13.3 nTPM
GTEx:11.3 nTPM
FANTOM5:50.4 Scaled Tags Per Million
Pig:27.5 nTPM

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 13.3
Sample id Sample description nTPM
Putamen
nTPM: 13.3
2647 Male, age 75, left hemisphere 15.5
1829 Male, age 74, unknown 15.4
2489 Female, age 72, unknown 13.6
1937 Female, age 91, right hemisphere 13.5
2482 Female, age 94, left hemisphere 12.7
2466 Female, age 79, unknown 12.3
1838 Male, age 80, right hemisphere 9.8

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 11.3
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 11.3
Samples: 205

Max nTPM: 26.5
Min nTPM: 3.6
Std nTPM: 3.2
Median nTPM: 11.2
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 26.5
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 22.2
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 21.3
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 20.6
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 18.1
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 17.9
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 17.2
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 17.0
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 16.9
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 16.7
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 16.5
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 16.2
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 16.2
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 15.8
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 15.7
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 15.5
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 15.5
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 15.4
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 15.4
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 15.3
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 15.2
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 15.1
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 14.8
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 14.7
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 14.7
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 14.7
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 14.7
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 14.6
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 14.6
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 14.4
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 14.2
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 14.1
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 14.1
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 14.0
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 14.0
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 13.9
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 13.9
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 13.9
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 13.8
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 13.8
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 13.7
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 13.7
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 13.7
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 13.6
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 13.6
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 13.6
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 13.5
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 13.5
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 13.5
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 13.3
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 13.2
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 13.2
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 13.1
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 13.1
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 13.1
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 13.0
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 13.0
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 13.0
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 12.9
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 12.9
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 12.8
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 12.8
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 12.8
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 12.8
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 12.7
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 12.6
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 12.5
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 12.5
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 12.4
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 12.4
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 12.4
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 12.3
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 12.2
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 12.2
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 12.1
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 12.1
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 12.1
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 12.1
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 12.0
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 12.0
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 12.0
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 11.9
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 11.9
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 11.9
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 11.9
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 11.8
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 11.8
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 11.8
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 11.8
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 11.7
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 11.6
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 11.6
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 11.6
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 11.6
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 11.5
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 11.4
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 11.4
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 11.4
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 11.3
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 11.2
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 11.2
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 11.2
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 11.2
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 11.2
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 11.2
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 11.2
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 11.1
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 11.1
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 11.1
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 11.0
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 11.0
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 10.9
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 10.9
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 10.8
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 10.8
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 10.7
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 10.7
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 10.7
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 10.6
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 10.6
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 10.6
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 10.6
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 10.6
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 10.6
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 10.5
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 10.4
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 10.4
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 10.4
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 10.3
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 10.3
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 10.2
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 10.2
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 10.2
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 10.1
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 10.0
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 10.0
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 10.0
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 9.9
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 9.9
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 9.8
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 9.7
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 9.7
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 9.6
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 9.6
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 9.6
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 9.6
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 9.6
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 9.5
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 9.5
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 9.5
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 9.4
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 9.4
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 9.3
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 9.3
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 9.3
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 9.2
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 9.2
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 9.0
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 8.9
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 8.9
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 8.9
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 8.8
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 8.8
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 8.7
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 8.6
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 8.6
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 8.4
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 8.4
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 8.3
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 8.3
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 8.3
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 8.2
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 8.2
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 8.2
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 8.0
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 7.9
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 7.8
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 7.7
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 7.7
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 7.6
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 7.5
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 7.5
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 7.5
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 7.4
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 7.1
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 6.9
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 6.9
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 6.9
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 6.9
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 6.9
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 6.7
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 6.6
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 6.4
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 6.3
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 6.3
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 6.2
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 6.2
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 6.0
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 6.0
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 6.0
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 5.9
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 5.8
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 5.8
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 5.6
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 3.6
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 50.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 50.4
FF:10176-103C5 60 years, female 50.4

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 27.5
Pig sample Sample description nTPM
Putamen
nTPM: 27.5
Samples: 4

Max nTPM: 34.9
Min nTPM: 19.4
Sample A Female 34.9
Sample B Female 19.4
Sample C Male 27.7
Sample D Male 28.0

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