MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:85.1 nTPM
HPA:85.1 nTPM
GTEx:104.2 nTPM
FANTOM5:154.5 Scaled Tags Per Million
Pig:124.3 nTPM
Mouse:224.6 nTPM
Allen mouse:19.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 85.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 74.9
2019 Male, age 18, unknown 81.0
2219 Male, age 76, both hemispheres 79.0
2411 Female, age 72, unknown 78.9
1827 Male, age 72, unknown 78.8
2828 Female, age 72, unknown 74.0
1870 Female, age 42, unknown 73.3
2666 Male, age 74, left hemisphere 72.0
1833 Male, age 53, unknown 70.6
2586 Male, age 75, left hemisphere 70.6
1830 Male, age 51, unknown 70.3
Dorsal raphe nucleus
nTPM: 77.8
2298 Female, age 72, unknown 86.5
1828 Male, age 53, unknown 78.1
2047 Male, age 72, unknown 77.4
2750 Male, age 76, both hemispheres 77.2
2016 Female, age 72, unknown 69.9
Inferior colliculus
nTPM: 74.0
2097 Female, age 72, unknown 79.8
1890 Male, age 53, unknown 74.7
1848 Female, age 42, unknown 73.8
2849 Male, age 72, unknown 67.9
Median raphe nucleus
nTPM: 74.6
2220 Male, age 76, midline 74.6
Pedunculopontine tegmental nucleus
nTPM: 78.3
1921 Female, age 85, both hemispheres 78.8
2334 Male, age 80, both hemispheres 78.5
2338 Male, age 61, both hemispheres 77.6
Periaquaductal grey, anterior
nTPM: 77.0
1947 Male, age 18, unknown 78.4
1795 Male, age 51, unknown 77.6
2502 Female, age 75, unknown 75.1
Periaquaductal grey, dorsal
nTPM: 68.5
1840 Male, age 53, unknown 69.3
2464 Female, age 72, unknown 69.3
1831 Male, age 72, unknown 68.8
2850 Male, age 76, both hemispheres 66.5
Periaquaductal grey, lateral
nTPM: 69.5
2272 Male, age 74, both hemispheres 74.1
2053 Male, age 18, unknown 69.9
2140 Male, age 76, both hemispheres 64.4
Pretectal area
nTPM: 78.3
1944 Female, age 72, unknown 85.0
1817 Female, age 42, unknown 84.3
2007 Male, age 72, unknown 83.6
1816 Male, age 51, unknown 83.3
2273 Male, age 74, both hemispheres 80.6
2667 Female, age 75, unknown 79.6
1815 Male, age 53, unknown 77.7
2224 Female, age 72, unknown 76.0
2407 Male, age 75, both hemispheres 71.6
2825 Male, age 18, unknown 71.1
2316 Male, age 76, right hemisphere 68.0
Red nucleus
nTPM: 76.0
1821 Female, age 72, unknown 88.4
1865 Male, age 51, unknown 78.7
2785 Male, age 18, unknown 77.8
1904 Male, age 53, unknown 77.3
2725 Female, age 75, unknown 77.1
2769 Male, age 72, unknown 76.0
2227 Male, age 72, unknown 75.8
2503 Female, age 72, unknown 75.7
1954 Female, age 42, unknown 75.6
2823 Male, age 76, right hemisphere 72.5
2588 Male, age 74, left hemisphere 69.5
2584 Male, age 75, left hemisphere 67.5
Substantia nigra
nTPM: 85.1
1916 Female, age 42, unknown 101.6
1941 Male, age 53, unknown 91.7
1851 Male, age 51, unknown 90.8
2409 Female, age 72, unknown 89.6
2241 Male, age 72, unknown 85.7
1889 Female, age 72, unknown 83.8
2699 Male, age 18, unknown 77.9
2590 Female, age 75, unknown 77.4
2583 Male, age 75, right hemisphere 76.2
2665 Male, age 74, both hemispheres 76.2
Superior colliculus
nTPM: 74.4
2087 Female, age 72, unknown 78.9
2668 Female, age 75, unknown 78.6
1796 Male, age 53, unknown 78.2
1895 Male, age 76, right hemisphere 76.3
2261 Male, age 18, unknown 75.9
2587 Male, age 74, left hemisphere 75.0
1913 Female, age 42, unknown 71.8
1839 Male, age 51, unknown 70.9
1995 Male, age 72, unknown 70.4
2664 Male, age 75, both hemispheres 67.8
Ventral tegmental area
nTPM: 81.3
2410 Female, age 72, unknown 92.0
1915 Female, age 42, unknown 87.7
2218 Male, age 76, both hemispheres 83.7
2223 Female, age 72, unknown 77.2
1942 Male, age 51, unknown 75.8
2021 Male, age 53, unknown 71.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 104.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 104.2
Samples: 139

Max nTPM: 303.7
Min nTPM: 60.6
Std nTPM: 34.4
Median nTPM: 95.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 303.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 244.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 214.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 205.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 176.9
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 170.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 163.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 160.4
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 159.8
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 159.1
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 153.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 154.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 154.5
FF:10158-103A5 76 years, female 154.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 124.3
Pig sample Sample description nTPM
Midbrain
nTPM: 124.3
Samples: 4

Max nTPM: 196.0
Min nTPM: 89.1
Sample A Female 196.0
Sample B Female 96.7
Sample C Male 115.3
Sample D Male 89.1
Periaqueductal gray
nTPM: 82.6
Samples: 3

Max nTPM: 91.1
Min nTPM: 74.2
Sample B Female 82.6
Sample C Male 91.1
Sample D Male 74.2
Substantia nigra
nTPM: 109.5
Samples: 4

Max nTPM: 137.3
Min nTPM: 89.4
Sample A Female 137.3
Sample B Female 89.4
Sample C Male 106.0
Sample D Male 105.4
Superior colliculi
nTPM: 118.2
Samples: 4

Max nTPM: 134.9
Min nTPM: 96.7
Sample A Female 134.9
Sample B Female 96.7
Sample C Male 133.3
Sample D Male 107.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 224.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 224.6
Samples: 4

Max nTPM: 240.4
Min nTPM: 214.9
Sample A Male 240.4
Sample B Male 215.9
Sample C Female 214.9
Sample D Female 227.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 19.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 19.9
545090 Antisense, RP_040810_02_H09, Mouse strain C57BL/6J (56 days, male) 19.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.