MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:30.2 nTPM
HPA:30.2 nTPM
GTEx:9.7 nTPM
FANTOM5:11.8 Scaled Tags Per Million
Pig:65.5 nTPM
Mouse:33.7 nTPM
Allen mouse:2.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 30.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.9
2666 Male, age 74, left hemisphere 38.0
2219 Male, age 76, both hemispheres 20.1
2586 Male, age 75, left hemisphere 20.1
2828 Female, age 72, unknown 16.6
1827 Male, age 72, unknown 13.9
1830 Male, age 51, unknown 12.6
1833 Male, age 53, unknown 12.1
1870 Female, age 42, unknown 10.6
2411 Female, age 72, unknown 8.3
2019 Male, age 18, unknown 6.7
Dorsal raphe nucleus
nTPM: 13.4
2298 Female, age 72, unknown 18.7
2750 Male, age 76, both hemispheres 15.4
2047 Male, age 72, unknown 13.4
1828 Male, age 53, unknown 9.9
2016 Female, age 72, unknown 9.7
Inferior colliculus
nTPM: 12.5
2097 Female, age 72, unknown 14.6
1890 Male, age 53, unknown 12.9
1848 Female, age 42, unknown 12.1
2849 Male, age 72, unknown 10.6
Median raphe nucleus
nTPM: 17.7
2220 Male, age 76, midline 17.7
Pedunculopontine tegmental nucleus
nTPM: 14.7
2334 Male, age 80, both hemispheres 19.3
1921 Female, age 85, both hemispheres 12.7
2338 Male, age 61, both hemispheres 11.9
Periaquaductal grey, anterior
nTPM: 30.2
1947 Male, age 18, unknown 52.4
1795 Male, age 51, unknown 29.5
2502 Female, age 75, unknown 8.7
Periaquaductal grey, dorsal
nTPM: 19.1
1831 Male, age 72, unknown 43.7
1840 Male, age 53, unknown 11.0
2850 Male, age 76, both hemispheres 11.0
2464 Female, age 72, unknown 10.6
Periaquaductal grey, lateral
nTPM: 9.4
2053 Male, age 18, unknown 11.4
2140 Male, age 76, both hemispheres 9.0
2272 Male, age 74, both hemispheres 7.7
Pretectal area
nTPM: 10.7
2825 Male, age 18, unknown 21.4
1817 Female, age 42, unknown 13.5
2224 Female, age 72, unknown 13.5
2407 Male, age 75, both hemispheres 13.1
2316 Male, age 76, right hemisphere 10.9
1815 Male, age 53, unknown 10.4
2007 Male, age 72, unknown 9.8
2667 Female, age 75, unknown 8.0
1944 Female, age 72, unknown 6.6
1816 Male, age 51, unknown 6.5
2273 Male, age 74, both hemispheres 4.2
Red nucleus
nTPM: 10.6
2584 Male, age 75, left hemisphere 21.1
2725 Female, age 75, unknown 13.1
1954 Female, age 42, unknown 12.0
1904 Male, age 53, unknown 11.8
2769 Male, age 72, unknown 10.6
2227 Male, age 72, unknown 10.4
1821 Female, age 72, unknown 9.4
1865 Male, age 51, unknown 8.8
2503 Female, age 72, unknown 8.1
2588 Male, age 74, left hemisphere 7.3
2823 Male, age 76, right hemisphere 7.2
2785 Male, age 18, unknown 7.1
Substantia nigra
nTPM: 10.4
2583 Male, age 75, right hemisphere 21.4
2590 Female, age 75, unknown 17.3
2665 Male, age 74, both hemispheres 13.2
1916 Female, age 42, unknown 8.7
2409 Female, age 72, unknown 8.6
1941 Male, age 53, unknown 8.3
1851 Male, age 51, unknown 8.0
1889 Female, age 72, unknown 7.2
2241 Male, age 72, unknown 6.1
2699 Male, age 18, unknown 4.8
Superior colliculus
nTPM: 10.9
1796 Male, age 53, unknown 17.4
2668 Female, age 75, unknown 15.6
1839 Male, age 51, unknown 14.9
2664 Male, age 75, both hemispheres 14.6
2587 Male, age 74, left hemisphere 11.7
1895 Male, age 76, right hemisphere 10.1
2261 Male, age 18, unknown 8.3
2087 Female, age 72, unknown 6.7
1995 Male, age 72, unknown 5.2
1913 Female, age 42, unknown 4.9
Ventral tegmental area
nTPM: 12.9
2223 Female, age 72, unknown 16.2
1942 Male, age 51, unknown 16.0
2021 Male, age 53, unknown 15.2
2218 Male, age 76, both hemispheres 11.9
1915 Female, age 42, unknown 10.4
2410 Female, age 72, unknown 7.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 9.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.7
Samples: 139

Max nTPM: 32.1
Min nTPM: 1.9
Std nTPM: 4.7
Median nTPM: 8.9
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 32.1
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 30.0
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 24.3
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 21.4
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 18.6
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 18.5
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 18.4
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 17.6
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 16.9
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 16.8
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 16.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 11.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 11.8
FF:10158-103A5 76 years, female 11.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 65.5
Pig sample Sample description nTPM
Midbrain
nTPM: 11.3
Samples: 4

Max nTPM: 16.7
Min nTPM: 4.4
Sample A Female 4.4
Sample B Female 8.4
Sample C Male 15.6
Sample D Male 16.7
Periaqueductal gray
nTPM: 3.6
Samples: 3

Max nTPM: 4.2
Min nTPM: 3.3
Sample B Female 4.2
Sample C Male 3.4
Sample D Male 3.3
Substantia nigra
nTPM: 16.1
Samples: 4

Max nTPM: 48.9
Min nTPM: 3.5
Sample A Female 7.7
Sample B Female 48.9
Sample C Male 3.5
Sample D Male 4.2
Superior colliculi
nTPM: 65.5
Samples: 4

Max nTPM: 177.9
Min nTPM: 3.5
Sample A Female 74.1
Sample B Female 177.9
Sample C Male 3.5
Sample D Male 6.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 33.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 33.7
Samples: 4

Max nTPM: 35.7
Min nTPM: 32.8
Sample A Male 35.7
Sample B Male 33.0
Sample C Female 32.8
Sample D Female 33.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.4
70191973 Antisense, RP_050517_01_A02, Mouse strain C57BL/6J (56 days, male) 2.7
73521826 Antisense, RP_051101_03_B10, Mouse strain C57BL/6J (56 days, male) 2.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.