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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:252.8 nTPM
HPA:252.8 nTPM
GTEx:97.8 nTPM
FANTOM5:99.7 Scaled Tags Per Million
Pig:6.0 nTPM
Mouse:98.0 nTPM
Allen mouse:17.2 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 252.8
Sample id Sample description nTPM
Amygdala
nTPM: 252.8
2814 Male, age 76, right hemisphere 256.3
2695 Female, age 67, right hemisphere 253.6
1987 Female, age 91, left hemisphere 253.2
2514 Male, age 75, right hemisphere 251.9
2517 Female, age 94, left hemisphere 249.0
Basal amygdala
nTPM: 248.3
2609 Male, age 75, right hemisphere 254.9
1955 Male, age 76, both hemispheres 251.3
2110 Male, age 80, left hemisphere 249.8
2685 Female, age 94, left hemisphere 246.7
2243 Female, age 91, right hemisphere 246.3
2827 Female, age 67, right hemisphere 240.6
Central amygdala
nTPM: 248.6
2826 Female, age 94, left hemisphere 251.7
2515 Male, age 75, right hemisphere 248.9
1905 Male, age 76, both hemispheres 248.7
2239 Male, age 80, left hemisphere 248.1
2701 Female, age 91, right hemisphere 245.7
Corticomedial amygdala
nTPM: 244.8
2829 Male, age 80, left hemisphere 251.6
2428 Male, age 75, right hemisphere 246.9
2240 Male, age 76, both hemispheres 243.8
2242 Female, age 91, right hemisphere 243.0
2429 Female, age 94, left hemisphere 241.9
2535 Female, age 67, right hemisphere 241.5
Lateral amygdala
nTPM: 246.5
2516 Male, age 75, right hemisphere 251.2
1883 Male, age 76, both hemispheres 248.7
2256 Male, age 80, left hemisphere 247.8
2534 Female, age 94, left hemisphere 246.9
2255 Female, age 91, right hemisphere 244.2
2830 Female, age 67, right hemisphere 239.8
Stria terminalis, bed nucleus
nTPM: 246.2
1974 Female, age 91, both hemispheres 251.2
2201 Male, age 74, unknown 244.7
2486 Female, age 94, both hemispheres 242.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 97.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 97.8
Samples: 152

Max nTPM: 218.4
Min nTPM: 43.4
Std nTPM: 29.0
Median nTPM: 92.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 218.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 210.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 192.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 186.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 180.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 170.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 159.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 157.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 150.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 145.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 144.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 139.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 137.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 136.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 136.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 133.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 132.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 127.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 127.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 122.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 121.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 121.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 119.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 118.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 118.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 116.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 115.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 114.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 114.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 112.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 112.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 111.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 111.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 111.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 111.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 111.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 111.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 110.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 109.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 108.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 106.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 106.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 105.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 105.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 104.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 104.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 103.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 103.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 103.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 102.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 102.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 102.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 102.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 101.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 101.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 101.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 100.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 99.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 98.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 98.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 97.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 97.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 97.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 96.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 96.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 96.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 95.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 95.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 93.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 93.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 93.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 93.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 93.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 92.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 92.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 92.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 92.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 91.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 91.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 90.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 90.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 89.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 89.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 88.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 88.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 88.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 88.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 87.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 87.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 87.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 87.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 87.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 86.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 86.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 86.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 86.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 85.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 84.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 84.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 84.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 84.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 84.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 84.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 84.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 84.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 83.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 83.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 80.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 80.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 80.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 80.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 80.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 79.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 79.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 79.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 79.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 79.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 79.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 78.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 78.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 78.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 77.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 77.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 76.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 76.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 75.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 74.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 74.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 74.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 73.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 73.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 73.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 73.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 73.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 73.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 72.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 72.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 71.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 71.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 70.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 68.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 68.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 66.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 65.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 63.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 58.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 53.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 52.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 49.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 48.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 46.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 43.4
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 99.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 99.7
FF:10151-102I7 76 years, female 99.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 6.0
Pig sample Sample description nTPM
Amygdala
nTPM: 6.0
Samples: 4

Max nTPM: 10.6
Min nTPM: 3.7
Sample A Female 4.6
Sample B Female 10.6
Sample C Male 3.7
Sample D Male 5.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 98.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 98.0
Samples: 4

Max nTPM: 99.5
Min nTPM: 96.9
Sample A Male 99.5
Sample B Male 98.0
Sample C Female 96.9
Sample D Female 97.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 17.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 17.2
68910955 Antisense, RP_041208_02_A09, Mouse strain C57BL/6J (56 days, male) 17.2

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