MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:10.4 nTPM
HPA:10.4 nTPM
GTEx:9.1 nTPM
FANTOM5:42.4 Scaled Tags Per Million
Pig:2.4 nTPM
Mouse:14.4 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 10.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 9.1
2019 Male, age 18, unknown 10.5
1830 Male, age 51, unknown 10.1
1833 Male, age 53, unknown 9.5
1827 Male, age 72, unknown 9.4
2666 Male, age 74, left hemisphere 9.2
2828 Female, age 72, unknown 9.2
1870 Female, age 42, unknown 8.8
2219 Male, age 76, both hemispheres 8.4
2411 Female, age 72, unknown 8.1
2586 Male, age 75, left hemisphere 8.1
Dorsal raphe nucleus
nTPM: 8.5
2016 Female, age 72, unknown 9.2
2750 Male, age 76, both hemispheres 9.2
1828 Male, age 53, unknown 9.0
2047 Male, age 72, unknown 8.4
2298 Female, age 72, unknown 7.0
Inferior colliculus
nTPM: 9.7
2849 Male, age 72, unknown 10.0
2097 Female, age 72, unknown 9.9
1890 Male, age 53, unknown 9.5
1848 Female, age 42, unknown 9.1
Median raphe nucleus
nTPM: 9.4
2220 Male, age 76, midline 9.4
Pedunculopontine tegmental nucleus
nTPM: 10.4
2338 Male, age 61, both hemispheres 12.7
1921 Female, age 85, both hemispheres 9.3
2334 Male, age 80, both hemispheres 9.3
Periaquaductal grey, anterior
nTPM: 8.4
1795 Male, age 51, unknown 8.7
1947 Male, age 18, unknown 8.7
2502 Female, age 75, unknown 7.8
Periaquaductal grey, dorsal
nTPM: 10.3
2850 Male, age 76, both hemispheres 11.8
1831 Male, age 72, unknown 11.1
1840 Male, age 53, unknown 9.3
2464 Female, age 72, unknown 8.9
Periaquaductal grey, lateral
nTPM: 10.1
2272 Male, age 74, both hemispheres 10.7
2053 Male, age 18, unknown 9.9
2140 Male, age 76, both hemispheres 9.6
Pretectal area
nTPM: 10.0
2407 Male, age 75, both hemispheres 15.1
2273 Male, age 74, both hemispheres 10.7
2316 Male, age 76, right hemisphere 10.5
1944 Female, age 72, unknown 9.6
2825 Male, age 18, unknown 9.6
2007 Male, age 72, unknown 9.5
1815 Male, age 53, unknown 9.4
2224 Female, age 72, unknown 9.3
1817 Female, age 42, unknown 9.0
2667 Female, age 75, unknown 9.0
1816 Male, age 51, unknown 8.9
Red nucleus
nTPM: 9.5
1865 Male, age 51, unknown 10.7
1904 Male, age 53, unknown 10.2
1954 Female, age 42, unknown 10.2
2584 Male, age 75, left hemisphere 9.9
2725 Female, age 75, unknown 9.8
2823 Male, age 76, right hemisphere 9.5
2785 Male, age 18, unknown 9.3
2227 Male, age 72, unknown 9.2
1821 Female, age 72, unknown 9.0
2769 Male, age 72, unknown 8.8
2503 Female, age 72, unknown 8.7
2588 Male, age 74, left hemisphere 8.6
Substantia nigra
nTPM: 8.9
2583 Male, age 75, right hemisphere 11.6
2590 Female, age 75, unknown 10.9
2409 Female, age 72, unknown 9.6
2699 Male, age 18, unknown 8.8
1941 Male, age 53, unknown 8.5
1889 Female, age 72, unknown 8.4
2665 Male, age 74, both hemispheres 8.4
2241 Male, age 72, unknown 8.2
1851 Male, age 51, unknown 7.8
1916 Female, age 42, unknown 7.3
Superior colliculus
nTPM: 9.7
1913 Female, age 42, unknown 10.5
1995 Male, age 72, unknown 10.5
2587 Male, age 74, left hemisphere 10.4
2664 Male, age 75, both hemispheres 9.9
1839 Male, age 51, unknown 9.8
2087 Female, age 72, unknown 9.8
1796 Male, age 53, unknown 9.4
2668 Female, age 75, unknown 9.0
2261 Male, age 18, unknown 8.7
1895 Male, age 76, right hemisphere 8.4
Ventral tegmental area
nTPM: 9.0
2218 Male, age 76, both hemispheres 9.8
2223 Female, age 72, unknown 9.8
2021 Male, age 53, unknown 9.6
1942 Male, age 51, unknown 8.6
1915 Female, age 42, unknown 8.4
2410 Female, age 72, unknown 7.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 9.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.1
Samples: 139

Max nTPM: 30.3
Min nTPM: 4.3
Std nTPM: 4.3
Median nTPM: 7.7
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 30.3
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 25.4
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 22.7
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 20.4
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 20.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 19.0
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 18.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 18.7
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 17.9
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 17.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 17.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 42.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 42.4
FF:10158-103A5 76 years, female 42.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 2.4
Pig sample Sample description nTPM
Midbrain
nTPM: 2.5
Samples: 4

Max nTPM: 2.7
Min nTPM: 2.2
Sample A Female 2.4
Sample B Female 2.7
Sample C Male 2.2
Sample D Male 2.5
Periaqueductal gray
nTPM: 2.4
Samples: 3

Max nTPM: 2.6
Min nTPM: 2.3
Sample B Female 2.4
Sample C Male 2.6
Sample D Male 2.3
Substantia nigra
nTPM: 2.3
Samples: 4

Max nTPM: 2.6
Min nTPM: 2.1
Sample A Female 2.1
Sample B Female 2.6
Sample C Male 2.2
Sample D Male 2.2
Superior colliculi
nTPM: 2.4
Samples: 4

Max nTPM: 2.5
Min nTPM: 2.1
Sample A Female 2.1
Sample B Female 2.5
Sample C Male 2.5
Sample D Male 2.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 14.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.4
Samples: 4

Max nTPM: 15.4
Min nTPM: 13.6
Sample A Male 13.6
Sample B Male 15.4
Sample C Female 13.7
Sample D Female 15.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
76097717 Antisense, RP_060626_01_D01, Mouse strain C57BL/6J (56 days, male) 0.8
77413686 Antisense, RP_070205_01_C10, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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