MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:15.7 nTPM
HPA:15.7 nTPM
GTEx:11.8 nTPM
FANTOM5:21.2 Scaled Tags Per Million
Pig:9.7 nTPM
Mouse:14.0 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 15.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.5
2019 Male, age 18, unknown 17.2
2666 Male, age 74, left hemisphere 16.0
2586 Male, age 75, left hemisphere 15.9
2411 Female, age 72, unknown 15.6
1827 Male, age 72, unknown 15.3
1830 Male, age 51, unknown 15.3
1833 Male, age 53, unknown 15.1
1870 Female, age 42, unknown 14.9
2828 Female, age 72, unknown 14.7
2219 Male, age 76, both hemispheres 14.6
Dorsal raphe nucleus
nTPM: 14.6
1828 Male, age 53, unknown 15.4
2047 Male, age 72, unknown 14.9
2016 Female, age 72, unknown 14.3
2298 Female, age 72, unknown 14.2
2750 Male, age 76, both hemispheres 14.2
Inferior colliculus
nTPM: 15.5
2849 Male, age 72, unknown 16.6
2097 Female, age 72, unknown 15.8
1890 Male, age 53, unknown 14.9
1848 Female, age 42, unknown 14.6
Median raphe nucleus
nTPM: 15.7
2220 Male, age 76, midline 15.7
Pedunculopontine tegmental nucleus
nTPM: 14.7
1921 Female, age 85, both hemispheres 15.1
2334 Male, age 80, both hemispheres 14.7
2338 Male, age 61, both hemispheres 14.4
Periaquaductal grey, anterior
nTPM: 15.1
1795 Male, age 51, unknown 15.2
2502 Female, age 75, unknown 15.1
1947 Male, age 18, unknown 15.0
Periaquaductal grey, dorsal
nTPM: 14.1
2464 Female, age 72, unknown 14.7
1831 Male, age 72, unknown 14.1
2850 Male, age 76, both hemispheres 13.9
1840 Male, age 53, unknown 13.7
Periaquaductal grey, lateral
nTPM: 13.9
2053 Male, age 18, unknown 14.8
2140 Male, age 76, both hemispheres 14.4
2272 Male, age 74, both hemispheres 12.5
Pretectal area
nTPM: 15.7
2007 Male, age 72, unknown 17.8
2407 Male, age 75, both hemispheres 17.0
1817 Female, age 42, unknown 16.9
1944 Female, age 72, unknown 16.2
1815 Male, age 53, unknown 15.8
1816 Male, age 51, unknown 15.7
2316 Male, age 76, right hemisphere 15.4
2224 Female, age 72, unknown 15.3
2667 Female, age 75, unknown 15.1
2825 Male, age 18, unknown 14.6
2273 Male, age 74, both hemispheres 13.1
Red nucleus
nTPM: 15.1
2584 Male, age 75, left hemisphere 17.4
2785 Male, age 18, unknown 15.8
2588 Male, age 74, left hemisphere 15.5
1821 Female, age 72, unknown 15.4
1954 Female, age 42, unknown 15.3
2725 Female, age 75, unknown 15.2
1865 Male, age 51, unknown 14.8
1904 Male, age 53, unknown 14.8
2823 Male, age 76, right hemisphere 14.7
2227 Male, age 72, unknown 14.6
2769 Male, age 72, unknown 14.2
2503 Female, age 72, unknown 13.4
Substantia nigra
nTPM: 15.0
2409 Female, age 72, unknown 19.2
2590 Female, age 75, unknown 15.4
2665 Male, age 74, both hemispheres 15.4
1916 Female, age 42, unknown 14.9
2583 Male, age 75, right hemisphere 14.8
1851 Male, age 51, unknown 14.5
1941 Male, age 53, unknown 14.5
1889 Female, age 72, unknown 14.4
2241 Male, age 72, unknown 13.9
2699 Male, age 18, unknown 13.4
Superior colliculus
nTPM: 15.3
1796 Male, age 53, unknown 16.1
1839 Male, age 51, unknown 16.1
2664 Male, age 75, both hemispheres 16.1
2087 Female, age 72, unknown 15.3
2668 Female, age 75, unknown 15.3
1913 Female, age 42, unknown 15.2
1895 Male, age 76, right hemisphere 15.0
1995 Male, age 72, unknown 14.7
2261 Male, age 18, unknown 14.7
2587 Male, age 74, left hemisphere 14.2
Ventral tegmental area
nTPM: 14.3
2218 Male, age 76, both hemispheres 15.0
2021 Male, age 53, unknown 14.6
1915 Female, age 42, unknown 14.5
2223 Female, age 72, unknown 14.2
1942 Male, age 51, unknown 14.1
2410 Female, age 72, unknown 13.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 11.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.8
Samples: 139

Max nTPM: 21.1
Min nTPM: 5.9
Std nTPM: 2.8
Median nTPM: 11.6
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 21.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 21.0
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 20.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 20.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 18.1
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 17.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 17.1
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 16.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 16.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 16.5
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 16.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 21.2
FF:10158-103A5 76 years, female 21.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 9.7
Pig sample Sample description nTPM
Midbrain
nTPM: 8.9
Samples: 4

Max nTPM: 13.0
Min nTPM: 6.9
Sample A Female 13.0
Sample B Female 8.2
Sample C Male 7.5
Sample D Male 6.9
Periaqueductal gray
nTPM: 8.2
Samples: 3

Max nTPM: 8.7
Min nTPM: 7.8
Sample B Female 8.1
Sample C Male 8.7
Sample D Male 7.8
Substantia nigra
nTPM: 9.6
Samples: 4

Max nTPM: 10.7
Min nTPM: 8.6
Sample A Female 10.7
Sample B Female 8.6
Sample C Male 9.2
Sample D Male 10.0
Superior colliculi
nTPM: 9.1
Samples: 4

Max nTPM: 9.8
Min nTPM: 8.6
Sample A Female 9.8
Sample B Female 8.8
Sample C Male 8.6
Sample D Male 9.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 14.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.0
Samples: 4

Max nTPM: 14.2
Min nTPM: 13.7
Sample A Male 14.2
Sample B Male 13.7
Sample C Female 14.1
Sample D Female 14.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
68445077 Antisense, RP_050111_02_F11, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.