MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:6.8 nTPM
HPA:6.8 nTPM
GTEx:109.8 nTPM
FANTOM5:85.8 Scaled Tags Per Million
Pig:74.4 nTPM
Mouse:62.6 nTPM
Allen mouse:2.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 6.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 6.4
2828 Female, age 72, unknown 7.3
2219 Male, age 76, both hemispheres 7.0
1830 Male, age 51, unknown 6.7
2586 Male, age 75, left hemisphere 6.7
1827 Male, age 72, unknown 6.6
1833 Male, age 53, unknown 6.4
2666 Male, age 74, left hemisphere 6.2
2019 Male, age 18, unknown 5.7
1870 Female, age 42, unknown 5.5
2411 Female, age 72, unknown 5.3
Dorsal raphe nucleus
nTPM: 6.0
2016 Female, age 72, unknown 7.2
2047 Male, age 72, unknown 6.4
1828 Male, age 53, unknown 5.7
2298 Female, age 72, unknown 5.6
2750 Male, age 76, both hemispheres 5.0
Inferior colliculus
nTPM: 6.4
2849 Male, age 72, unknown 7.2
1848 Female, age 42, unknown 7.1
2097 Female, age 72, unknown 6.2
1890 Male, age 53, unknown 5.1
Median raphe nucleus
nTPM: 6.8
2220 Male, age 76, midline 6.8
Pedunculopontine tegmental nucleus
nTPM: 5.5
2338 Male, age 61, both hemispheres 5.8
1921 Female, age 85, both hemispheres 5.5
2334 Male, age 80, both hemispheres 5.2
Periaquaductal grey, anterior
nTPM: 6.2
1947 Male, age 18, unknown 6.5
2502 Female, age 75, unknown 6.2
1795 Male, age 51, unknown 5.9
Periaquaductal grey, dorsal
nTPM: 6.8
1831 Male, age 72, unknown 7.9
1840 Male, age 53, unknown 7.1
2464 Female, age 72, unknown 6.3
2850 Male, age 76, both hemispheres 5.9
Periaquaductal grey, lateral
nTPM: 6.6
2272 Male, age 74, both hemispheres 6.8
2053 Male, age 18, unknown 6.7
2140 Male, age 76, both hemispheres 6.2
Pretectal area
nTPM: 6.2
2316 Male, age 76, right hemisphere 7.1
2407 Male, age 75, both hemispheres 7.0
2273 Male, age 74, both hemispheres 6.9
2667 Female, age 75, unknown 6.2
2224 Female, age 72, unknown 6.1
1815 Male, age 53, unknown 6.0
2825 Male, age 18, unknown 6.0
1816 Male, age 51, unknown 5.7
1817 Female, age 42, unknown 5.7
1944 Female, age 72, unknown 5.7
2007 Male, age 72, unknown 5.6
Red nucleus
nTPM: 6.4
2823 Male, age 76, right hemisphere 8.8
2584 Male, age 75, left hemisphere 7.4
1904 Male, age 53, unknown 6.8
2503 Female, age 72, unknown 6.8
2725 Female, age 75, unknown 6.5
1821 Female, age 72, unknown 6.1
1865 Male, age 51, unknown 6.0
1954 Female, age 42, unknown 6.0
2769 Male, age 72, unknown 6.0
2588 Male, age 74, left hemisphere 5.8
2227 Male, age 72, unknown 5.7
2785 Male, age 18, unknown 5.2
Substantia nigra
nTPM: 6.0
2699 Male, age 18, unknown 8.9
2590 Female, age 75, unknown 7.1
2583 Male, age 75, right hemisphere 6.9
2665 Male, age 74, both hemispheres 6.7
1851 Male, age 51, unknown 6.2
2409 Female, age 72, unknown 5.2
1916 Female, age 42, unknown 5.1
1889 Female, age 72, unknown 4.8
1941 Male, age 53, unknown 4.8
2241 Male, age 72, unknown 4.0
Superior colliculus
nTPM: 6.6
1995 Male, age 72, unknown 7.9
1913 Female, age 42, unknown 7.5
2664 Male, age 75, both hemispheres 7.5
2587 Male, age 74, left hemisphere 7.3
1796 Male, age 53, unknown 7.2
1839 Male, age 51, unknown 6.5
2087 Female, age 72, unknown 5.6
2261 Male, age 18, unknown 5.5
1895 Male, age 76, right hemisphere 5.4
2668 Female, age 75, unknown 5.2
Ventral tegmental area
nTPM: 6.4
2021 Male, age 53, unknown 8.1
1942 Male, age 51, unknown 6.8
2218 Male, age 76, both hemispheres 6.8
1915 Female, age 42, unknown 5.7
2410 Female, age 72, unknown 5.7
2223 Female, age 72, unknown 5.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 109.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 109.8
Samples: 139

Max nTPM: 234.8
Min nTPM: 69.9
Std nTPM: 26.6
Median nTPM: 104.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 234.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 216.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 198.5
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 171.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 168.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 163.4
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 158.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 156.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 151.3
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 150.3
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 147.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 85.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 85.8
FF:10158-103A5 76 years, female 85.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 74.4
Pig sample Sample description nTPM
Midbrain
nTPM: 71.2
Samples: 4

Max nTPM: 93.4
Min nTPM: 56.9
Sample A Female 93.4
Sample B Female 65.6
Sample C Male 68.9
Sample D Male 56.9
Periaqueductal gray
nTPM: 54.3
Samples: 3

Max nTPM: 58.2
Min nTPM: 48.9
Sample B Female 55.8
Sample C Male 58.2
Sample D Male 48.9
Substantia nigra
nTPM: 65.8
Samples: 4

Max nTPM: 74.0
Min nTPM: 61.0
Sample A Female 74.0
Sample B Female 61.0
Sample C Male 63.9
Sample D Male 64.2
Superior colliculi
nTPM: 74.4
Samples: 4

Max nTPM: 80.2
Min nTPM: 68.1
Sample A Female 80.2
Sample B Female 73.4
Sample C Male 76.0
Sample D Male 68.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 62.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 62.7
Samples: 4

Max nTPM: 67.0
Min nTPM: 58.4
Sample A Male 67.0
Sample B Male 61.6
Sample C Female 63.6
Sample D Female 58.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.8
69671953 Antisense, RP_050428_02_F10, Mouse strain C57BL/6J (56 days, male) 2.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.