BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:37.1 nTPM
HPA:37.1 nTPM
GTEx:16.9 nTPM
FANTOM5:237.1 Scaled Tags Per Million
Pig:112.4 nTPM
Mouse:96.7 nTPM
Allen mouse:0.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 37.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 37.1
2846 Female, age 79, unknown 65.7
2290 Female, age 72, unknown 63.4
1857 Female, age 85, left hemisphere 53.9
1854 Male, age 80, left hemisphere 46.0
1781 Male, age 74, unknown 35.4
2289 Male, age 61, right hemisphere 20.1
2288 Male, age 75, left hemisphere 7.8
2481 Female, age 94, left hemisphere 4.4
Claustrum
nTPM: 9.1
2196 Female, age 79, unknown 19.0
2392 Female, age 94, both hemispheres 12.5
2198 Male, age 80, both hemispheres 11.5
2284 Female, age 91, both hemispheres 10.3
1956 Male, age 74, unknown 8.9
2491 Male, age 75, both hemispheres 8.0
2568 Male, age 61, both hemispheres 7.1
2645 Female, age 72, unknown 5.0
2292 Female, age 85, both hemispheres 0.0
Globus pallidus, externus
nTPM: 0.3
1996 Male, age 80, right hemisphere 1.6
2395 Male, age 75, both hemispheres 0.0
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 1.2
2483 Female, age 94, right hemisphere 6.0
2037 Male, age 80, right hemisphere 2.6
1818 Male, age 74, unknown 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 26.7
1856 Female, age 91, right hemisphere 51.1
1783 Male, age 74, unknown 49.2
1806 Female, age 85, left hemisphere 39.9
2824 Male, age 61, right hemisphere 34.2
2698 Female, age 72, unknown 27.9
2286 Male, age 75, left hemisphere 9.2
2391 Female, age 94, left hemisphere 2.3
2732 Male, age 80, right hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 15.8
2393 Male, age 80, right hemisphere 36.5
2484 Female, age 94, left hemisphere 15.3
2821 Male, age 75, both hemispheres 11.5
2569 Male, age 61, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 10.6
2775 Male, age 80, right hemisphere 14.7
2029 Male, age 61, right hemisphere 14.4
1812 Female, age 91, both hemispheres 13.4
2195 Female, age 85, both hemispheres 10.4
1979 Male, age 74, unknown 0.0
Olfactory tubercle
nTPM: 15.0
1998 Female, age 91, both hemispheres 26.9
2487 Female, age 94, left hemisphere 11.5
1846 Male, age 80, right hemisphere 11.3
2856 Male, age 75, right hemisphere 10.2
Putamen
nTPM: 32.1
2466 Female, age 79, unknown 52.7
1838 Male, age 80, right hemisphere 52.4
1829 Male, age 74, unknown 47.5
1937 Female, age 91, right hemisphere 46.8
2489 Female, age 72, unknown 15.0
2482 Female, age 94, left hemisphere 10.2
2647 Male, age 75, left hemisphere 0.0
Septal nuclei
nTPM: 5.5
2031 Female, age 72, unknown 17.0
1960 Male, age 74, unknown 12.0
2009 Female, age 91, both hemispheres 6.0
2629 Female, age 94, right hemisphere 2.6
2059 Female, age 85, both hemispheres 0.8
2199 Male, age 80, right hemisphere 0.0
2394 Male, age 61, left hemisphere 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 16.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 16.9
Samples: 246

Max nTPM: 136.3
Min nTPM: 0.7
Std nTPM: 14.7
Median nTPM: 13.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 136.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 72.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 65.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 58.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 51.8
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 50.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 48.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 48.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 45.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 44.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 43.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 15.9
Samples: 246

Max nTPM: 57.9
Min nTPM: 0.4
Std nTPM: 10.8
Median nTPM: 14.2
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 57.9
GTEX-WWYW-0011-R6A-SM-3NB3G 50-59 years, female 50.7
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 45.3
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 44.0
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 43.7
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 42.6
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 41.7
GTEX-14JIY-0011-R6b-SM-68714 60-69 years, male 40.8
GTEX-T6MN-0011-R6A-SM-32QP8 50-59 years, male 40.5
GTEX-QVJO-0011-R6A-SM-2S1QN 60-69 years, female 38.9
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 36.8
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Brain - Putamen (basal ganglia)
Average nTPM: 12.9
Samples: 205

Max nTPM: 61.8
Min nTPM: 1.0
Std nTPM: 9.5
Median nTPM: 10.8
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 61.8
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 41.9
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 37.2
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 35.5
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 35.2
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 33.0
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 33.0
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 33.0
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 32.5
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 32.1
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 29.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 237.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 171.2
FF:10164-103B2 76 years, female 171.2
Globus pallidus
Scaled Tags Per Million: 64.4
FF:10175-103C4 60 years, female 102.6
FF:10161-103A8 76 years, female 26.1
Nucleus accumbens
Scaled Tags Per Million: 124.1
FF:10037-101F1 23-56 years, mixed 124.1
Putamen
Scaled Tags Per Million: 237.1
FF:10176-103C5 60 years, female 237.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 112.4
Pig sample Sample description nTPM
Caudate
nTPM: 112.4
Samples: 4

Max nTPM: 128.1
Min nTPM: 96.8
Sample A Female 96.8
Sample B Female 108.8
Sample C Male 128.1
Sample D Male 115.9
Putamen
nTPM: 102.5
Samples: 4

Max nTPM: 135.8
Min nTPM: 51.7
Sample A Female 51.7
Sample B Female 111.4
Sample C Male 135.8
Sample D Male 111.0
Septum
nTPM: 37.5
Samples: 4

Max nTPM: 68.5
Min nTPM: 10.6
Sample A Female 58.4
Sample B Female 68.5
Sample C Male 10.6
Sample D Male 12.5
Ventral pallidum
nTPM: 65.2
Samples: 4

Max nTPM: 93.5
Min nTPM: 14.7
Sample A Female 93.5
Sample B Female 79.1
Sample C Male 14.7
Sample D Male 73.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 96.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 96.7
Samples: 4

Max nTPM: 105.8
Min nTPM: 90.4
Sample A Male 105.8
Sample B Male 99.4
Sample C Female 91.3
Sample D Female 90.4
Septum
nTPM: 27.7
Samples: 4

Max nTPM: 32.6
Min nTPM: 24.6
Sample A Male 32.6
Sample B Male 24.6
Sample C Female 28.3
Sample D Female 25.3
Ventral forebrain
nTPM: 75.9
Samples: 4

Max nTPM: 82.0
Min nTPM: 71.2
Sample A Male 82.0
Sample B Male 71.2
Sample C Female 72.3
Sample D Female 77.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
75985954 Antisense, RP_060606_02_C07, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.1
75985954 Antisense, RP_060606_02_C07, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

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