MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:19.8 nTPM
HPA:19.8 nTPM
GTEx:14.0 nTPM
FANTOM5:41.6 Scaled Tags Per Million
Pig:16.9 nTPM
Mouse:30.3 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 19.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 13.2
2666 Male, age 74, left hemisphere 17.5
2828 Female, age 72, unknown 15.0
1830 Male, age 51, unknown 14.5
1833 Male, age 53, unknown 13.3
1870 Female, age 42, unknown 12.7
2411 Female, age 72, unknown 12.3
1827 Male, age 72, unknown 12.1
2586 Male, age 75, left hemisphere 12.1
2019 Male, age 18, unknown 11.6
2219 Male, age 76, both hemispheres 10.6
Dorsal raphe nucleus
nTPM: 15.0
2016 Female, age 72, unknown 16.0
2298 Female, age 72, unknown 15.4
2047 Male, age 72, unknown 15.0
1828 Male, age 53, unknown 14.7
2750 Male, age 76, both hemispheres 13.9
Inferior colliculus
nTPM: 11.3
1890 Male, age 53, unknown 11.7
1848 Female, age 42, unknown 11.3
2097 Female, age 72, unknown 11.1
2849 Male, age 72, unknown 11.1
Median raphe nucleus
nTPM: 13.9
2220 Male, age 76, midline 13.9
Pedunculopontine tegmental nucleus
nTPM: 19.8
2338 Male, age 61, both hemispheres 37.0
2334 Male, age 80, both hemispheres 13.4
1921 Female, age 85, both hemispheres 9.0
Periaquaductal grey, anterior
nTPM: 11.4
1795 Male, age 51, unknown 12.5
1947 Male, age 18, unknown 11.6
2502 Female, age 75, unknown 10.3
Periaquaductal grey, dorsal
nTPM: 13.6
2850 Male, age 76, both hemispheres 14.3
1831 Male, age 72, unknown 13.8
1840 Male, age 53, unknown 13.8
2464 Female, age 72, unknown 12.4
Periaquaductal grey, lateral
nTPM: 15.3
2272 Male, age 74, both hemispheres 15.9
2053 Male, age 18, unknown 15.1
2140 Male, age 76, both hemispheres 14.8
Pretectal area
nTPM: 12.8
2407 Male, age 75, both hemispheres 16.6
2316 Male, age 76, right hemisphere 14.1
2273 Male, age 74, both hemispheres 13.9
2224 Female, age 72, unknown 13.5
1815 Male, age 53, unknown 13.0
2825 Male, age 18, unknown 12.9
1944 Female, age 72, unknown 12.3
2007 Male, age 72, unknown 11.9
1817 Female, age 42, unknown 11.8
2667 Female, age 75, unknown 10.6
1816 Male, age 51, unknown 10.2
Red nucleus
nTPM: 13.4
2584 Male, age 75, left hemisphere 15.3
1865 Male, age 51, unknown 14.7
2725 Female, age 75, unknown 14.6
2769 Male, age 72, unknown 14.5
2823 Male, age 76, right hemisphere 13.9
2227 Male, age 72, unknown 13.5
2503 Female, age 72, unknown 13.4
1904 Male, age 53, unknown 13.3
1954 Female, age 42, unknown 12.9
2785 Male, age 18, unknown 12.7
1821 Female, age 72, unknown 11.5
2588 Male, age 74, left hemisphere 10.4
Substantia nigra
nTPM: 15.9
2590 Female, age 75, unknown 25.4
2583 Male, age 75, right hemisphere 19.9
2699 Male, age 18, unknown 18.0
2665 Male, age 74, both hemispheres 17.2
1851 Male, age 51, unknown 15.0
1941 Male, age 53, unknown 13.8
2409 Female, age 72, unknown 13.6
1916 Female, age 42, unknown 13.0
2241 Male, age 72, unknown 12.9
1889 Female, age 72, unknown 10.8
Superior colliculus
nTPM: 13.3
1995 Male, age 72, unknown 16.0
1913 Female, age 42, unknown 15.7
2664 Male, age 75, both hemispheres 15.5
2587 Male, age 74, left hemisphere 14.6
1839 Male, age 51, unknown 13.1
2261 Male, age 18, unknown 12.8
1796 Male, age 53, unknown 12.1
2087 Female, age 72, unknown 11.5
1895 Male, age 76, right hemisphere 10.9
2668 Female, age 75, unknown 10.9
Ventral tegmental area
nTPM: 14.1
2223 Female, age 72, unknown 15.4
2021 Male, age 53, unknown 15.3
1915 Female, age 42, unknown 13.9
2218 Male, age 76, both hemispheres 13.6
1942 Male, age 51, unknown 13.3
2410 Female, age 72, unknown 13.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 14.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.0
Samples: 139

Max nTPM: 66.5
Min nTPM: 1.6
Std nTPM: 10.5
Median nTPM: 10.3
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 66.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 45.6
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 43.0
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 42.8
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 42.4
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 42.3
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 39.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 37.8
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 37.6
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 35.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 33.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 41.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 41.6
FF:10158-103A5 76 years, female 41.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 16.9
Pig sample Sample description nTPM
Midbrain
nTPM: 14.9
Samples: 4

Max nTPM: 35.0
Min nTPM: 5.3
Sample A Female 8.9
Sample B Female 10.2
Sample C Male 35.0
Sample D Male 5.3
Periaqueductal gray
nTPM: 14.2
Samples: 3

Max nTPM: 20.7
Min nTPM: 10.1
Sample B Female 10.1
Sample C Male 20.7
Sample D Male 11.9
Substantia nigra
nTPM: 11.1
Samples: 4

Max nTPM: 15.9
Min nTPM: 4.0
Sample A Female 15.8
Sample B Female 8.8
Sample C Male 15.9
Sample D Male 4.0
Superior colliculi
nTPM: 16.9
Samples: 4

Max nTPM: 32.3
Min nTPM: 10.6
Sample A Female 10.6
Sample B Female 11.8
Sample C Male 32.3
Sample D Male 12.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 30.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 30.3
Samples: 4

Max nTPM: 34.6
Min nTPM: 23.2
Sample A Male 34.6
Sample B Male 23.2
Sample C Female 29.2
Sample D Female 34.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68300980 Antisense, RP_041129_02_E08, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.