MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:88.6 nTPM
HPA:88.6 nTPM
GTEx:103.1 nTPM
FANTOM5:38.7 Scaled Tags Per Million
Pig:19.3 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 88.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 83.5
2411 Female, age 72, unknown 87.3
2666 Male, age 74, left hemisphere 87.1
1870 Female, age 42, unknown 85.9
1833 Male, age 53, unknown 84.8
1830 Male, age 51, unknown 84.4
2828 Female, age 72, unknown 82.7
2019 Male, age 18, unknown 82.1
1827 Male, age 72, unknown 81.5
2219 Male, age 76, both hemispheres 81.0
2586 Male, age 75, left hemisphere 78.0
Dorsal raphe nucleus
nTPM: 81.5
2750 Male, age 76, both hemispheres 84.5
2016 Female, age 72, unknown 82.8
1828 Male, age 53, unknown 82.7
2047 Male, age 72, unknown 80.4
2298 Female, age 72, unknown 77.0
Inferior colliculus
nTPM: 81.7
2849 Male, age 72, unknown 83.8
1890 Male, age 53, unknown 82.9
1848 Female, age 42, unknown 82.2
2097 Female, age 72, unknown 78.0
Median raphe nucleus
nTPM: 80.9
2220 Male, age 76, midline 80.9
Pedunculopontine tegmental nucleus
nTPM: 82.4
1921 Female, age 85, both hemispheres 82.4
2338 Male, age 61, both hemispheres 82.4
2334 Male, age 80, both hemispheres 82.3
Periaquaductal grey, anterior
nTPM: 78.5
1947 Male, age 18, unknown 81.4
2502 Female, age 75, unknown 77.8
1795 Male, age 51, unknown 76.3
Periaquaductal grey, dorsal
nTPM: 80.2
2464 Female, age 72, unknown 82.7
1840 Male, age 53, unknown 81.4
2850 Male, age 76, both hemispheres 78.7
1831 Male, age 72, unknown 77.9
Periaquaductal grey, lateral
nTPM: 78.2
2053 Male, age 18, unknown 81.6
2140 Male, age 76, both hemispheres 78.1
2272 Male, age 74, both hemispheres 75.0
Pretectal area
nTPM: 79.2
2316 Male, age 76, right hemisphere 84.2
2825 Male, age 18, unknown 82.8
2407 Male, age 75, both hemispheres 82.6
1815 Male, age 53, unknown 81.0
2224 Female, age 72, unknown 78.7
1817 Female, age 42, unknown 77.9
2667 Female, age 75, unknown 77.9
2007 Male, age 72, unknown 77.3
2273 Male, age 74, both hemispheres 76.5
1816 Male, age 51, unknown 76.3
1944 Female, age 72, unknown 76.3
Red nucleus
nTPM: 88.6
2588 Male, age 74, left hemisphere 92.9
2823 Male, age 76, right hemisphere 90.9
1904 Male, age 53, unknown 90.6
2503 Female, age 72, unknown 90.1
2769 Male, age 72, unknown 89.6
1865 Male, age 51, unknown 89.3
1821 Female, age 72, unknown 89.2
1954 Female, age 42, unknown 89.0
2227 Male, age 72, unknown 88.4
2725 Female, age 75, unknown 88.4
2584 Male, age 75, left hemisphere 82.3
2785 Male, age 18, unknown 82.3
Substantia nigra
nTPM: 84.0
2409 Female, age 72, unknown 87.4
2241 Male, age 72, unknown 86.1
1851 Male, age 51, unknown 85.6
2699 Male, age 18, unknown 85.6
2590 Female, age 75, unknown 85.5
2665 Male, age 74, both hemispheres 83.4
1916 Female, age 42, unknown 83.1
2583 Male, age 75, right hemisphere 83.0
1889 Female, age 72, unknown 80.4
1941 Male, age 53, unknown 79.5
Superior colliculus
nTPM: 81.0
1895 Male, age 76, right hemisphere 86.1
2587 Male, age 74, left hemisphere 83.3
1995 Male, age 72, unknown 83.0
1839 Male, age 51, unknown 82.4
1913 Female, age 42, unknown 82.3
2668 Female, age 75, unknown 81.4
1796 Male, age 53, unknown 79.2
2087 Female, age 72, unknown 78.6
2664 Male, age 75, both hemispheres 77.9
2261 Male, age 18, unknown 75.9
Ventral tegmental area
nTPM: 83.0
1915 Female, age 42, unknown 85.9
2410 Female, age 72, unknown 84.6
1942 Male, age 51, unknown 83.9
2223 Female, age 72, unknown 82.8
2218 Male, age 76, both hemispheres 80.9
2021 Male, age 53, unknown 80.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 103.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 103.1
Samples: 139

Max nTPM: 249.7
Min nTPM: 30.0
Std nTPM: 35.9
Median nTPM: 92.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 249.7
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 220.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 215.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 213.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 194.1
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 192.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 167.9
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 160.0
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 157.3
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 157.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 155.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 38.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 38.7
FF:10158-103A5 76 years, female 38.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 19.3
Pig sample Sample description nTPM
Midbrain
nTPM: 17.0
Samples: 4

Max nTPM: 20.7
Min nTPM: 12.9
Sample A Female 19.6
Sample B Female 14.7
Sample C Male 20.7
Sample D Male 12.9
Periaqueductal gray
nTPM: 13.0
Samples: 3

Max nTPM: 14.1
Min nTPM: 11.5
Sample B Female 13.3
Sample C Male 14.1
Sample D Male 11.5
Substantia nigra
nTPM: 14.8
Samples: 4

Max nTPM: 18.2
Min nTPM: 12.8
Sample A Female 18.2
Sample B Female 12.9
Sample C Male 15.1
Sample D Male 12.8
Superior colliculi
nTPM: 19.3
Samples: 4

Max nTPM: 27.3
Min nTPM: 15.7
Sample A Female 18.2
Sample B Female 15.9
Sample C Male 27.3
Sample D Male 15.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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