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CCDC85B
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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
GTEx:125.0 nTPM
FANTOM5:136.5 Scaled Tags Per Million
Pig:95.0 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA054415
Glial cells Not detected
Neuronal cells Low



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 125.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 125.0
Samples: 246

Max nTPM: 392.9
Min nTPM: 32.8
Std nTPM: 56.0
Median nTPM: 118.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 392.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 362.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 329.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 310.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 292.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 281.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 249.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 240.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 238.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 235.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 233.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 229.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 229.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 227.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 209.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 209.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 207.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 206.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 205.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 205.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 197.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 194.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 194.7
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 192.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 190.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 189.9
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 187.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 183.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 180.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 178.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 176.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 175.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 175.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 172.4
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 172.0
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 171.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 171.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 170.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 169.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 168.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 168.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 168.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 167.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 165.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 164.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 164.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 163.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 162.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 162.3
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 161.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 160.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 160.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 158.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 158.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 157.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 156.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 155.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 155.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 154.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 153.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 152.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 152.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 149.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 149.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 148.6
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 146.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 146.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 144.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 144.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 143.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 142.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 142.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 141.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 141.7
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 141.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 139.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 139.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 139.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 139.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 139.1
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 139.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 138.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 138.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 136.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 136.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 136.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 136.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 135.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 135.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 134.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 134.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 134.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 133.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 133.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 133.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 132.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 131.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 131.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 130.2
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 129.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 129.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 128.5
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 128.4
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 127.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 127.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 127.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 127.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 125.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 125.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 123.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 123.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 123.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 122.9
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 122.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 122.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 121.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 121.5
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 121.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 121.0
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 120.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 119.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 119.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 119.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 118.8
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 117.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 117.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 116.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 116.1
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 115.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 115.7
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 115.1
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 114.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 114.4
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 114.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 114.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 113.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 113.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 113.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 112.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 112.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 112.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 111.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 110.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 109.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 109.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 108.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 108.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 108.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 108.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 108.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 107.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 107.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 107.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 107.5
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 107.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 106.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 105.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 105.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 105.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 104.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 104.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 103.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 101.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 101.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 100.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 100.0
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 99.7
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 99.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 99.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 99.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 98.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 98.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 97.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 97.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 95.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 95.3
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 94.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 94.1
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 94.0
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 93.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 92.2
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 91.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 90.8
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 89.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 89.5
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 88.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 88.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 88.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 88.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 87.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 85.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 84.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 83.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 82.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 82.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 82.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 81.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 81.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 80.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 80.0
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 77.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 76.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 75.0
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 74.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 74.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 73.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 73.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 73.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 73.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 72.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 70.8
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 68.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 68.2
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 67.4
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 66.2
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 63.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 63.9
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 63.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 62.7
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 61.8
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 57.6
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 56.6
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 53.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 53.7
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 52.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 52.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 52.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 50.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 50.6
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 50.4
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 50.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 49.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 49.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 46.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 46.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 43.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 43.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 42.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 41.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 40.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 36.2
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 36.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 35.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 35.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 33.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 32.8
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 136.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 136.5
FF:10164-103B2 76 years, female 136.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 95.0
Pig sample Sample description nTPM
Caudate
nTPM: 95.0
Samples: 4

Max nTPM: 111.6
Min nTPM: 75.0
Sample A Female 75.0
Sample B Female 106.6
Sample C Male 111.6
Sample D Male 86.7

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