MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:80.3 nTPM
HPA:80.3 nTPM
GTEx:64.6 nTPM
FANTOM5:71.6 Scaled Tags Per Million
Pig:66.0 nTPM
Mouse:114.7 nTPM
Allen mouse:7.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 80.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 65.4
2586 Male, age 75, left hemisphere 90.1
2019 Male, age 18, unknown 67.9
2828 Female, age 72, unknown 67.5
2666 Male, age 74, left hemisphere 64.3
1827 Male, age 72, unknown 64.1
2219 Male, age 76, both hemispheres 63.4
2411 Female, age 72, unknown 62.0
1830 Male, age 51, unknown 59.4
1833 Male, age 53, unknown 59.1
1870 Female, age 42, unknown 56.4
Dorsal raphe nucleus
nTPM: 54.7
1828 Male, age 53, unknown 61.7
2750 Male, age 76, both hemispheres 57.4
2047 Male, age 72, unknown 57.2
2298 Female, age 72, unknown 48.8
2016 Female, age 72, unknown 48.3
Inferior colliculus
nTPM: 54.6
1848 Female, age 42, unknown 58.3
2849 Male, age 72, unknown 57.6
1890 Male, age 53, unknown 52.9
2097 Female, age 72, unknown 49.5
Median raphe nucleus
nTPM: 50.4
2220 Male, age 76, midline 50.4
Pedunculopontine tegmental nucleus
nTPM: 53.7
1921 Female, age 85, both hemispheres 58.4
2334 Male, age 80, both hemispheres 54.3
2338 Male, age 61, both hemispheres 48.5
Periaquaductal grey, anterior
nTPM: 65.1
2502 Female, age 75, unknown 76.7
1947 Male, age 18, unknown 60.5
1795 Male, age 51, unknown 58.1
Periaquaductal grey, dorsal
nTPM: 47.8
2464 Female, age 72, unknown 60.2
1840 Male, age 53, unknown 51.8
1831 Male, age 72, unknown 43.8
2850 Male, age 76, both hemispheres 35.5
Periaquaductal grey, lateral
nTPM: 42.2
2053 Male, age 18, unknown 47.7
2140 Male, age 76, both hemispheres 40.9
2272 Male, age 74, both hemispheres 38.1
Pretectal area
nTPM: 61.4
1944 Female, age 72, unknown 80.5
1816 Male, age 51, unknown 75.5
2007 Male, age 72, unknown 73.6
2667 Female, age 75, unknown 72.6
1817 Female, age 42, unknown 63.2
1815 Male, age 53, unknown 61.5
2407 Male, age 75, both hemispheres 59.2
2825 Male, age 18, unknown 54.8
2316 Male, age 76, right hemisphere 49.5
2224 Female, age 72, unknown 49.3
2273 Male, age 74, both hemispheres 35.4
Red nucleus
nTPM: 62.4
2588 Male, age 74, left hemisphere 71.1
2584 Male, age 75, left hemisphere 68.2
2823 Male, age 76, right hemisphere 67.7
2769 Male, age 72, unknown 64.6
2785 Male, age 18, unknown 63.6
2227 Male, age 72, unknown 63.3
1865 Male, age 51, unknown 61.7
1904 Male, age 53, unknown 61.1
2503 Female, age 72, unknown 60.0
1821 Female, age 72, unknown 59.7
1954 Female, age 42, unknown 58.5
2725 Female, age 75, unknown 49.8
Substantia nigra
nTPM: 80.3
1916 Female, age 42, unknown 118.3
1941 Male, age 53, unknown 91.3
2665 Male, age 74, both hemispheres 87.9
1851 Male, age 51, unknown 85.6
2241 Male, age 72, unknown 75.4
2699 Male, age 18, unknown 75.1
2409 Female, age 72, unknown 74.5
2583 Male, age 75, right hemisphere 69.6
1889 Female, age 72, unknown 67.7
2590 Female, age 75, unknown 58.2
Superior colliculus
nTPM: 61.9
2087 Female, age 72, unknown 77.8
2664 Male, age 75, both hemispheres 72.8
2668 Female, age 75, unknown 72.3
1895 Male, age 76, right hemisphere 64.1
2261 Male, age 18, unknown 62.9
1796 Male, age 53, unknown 60.9
1839 Male, age 51, unknown 56.7
1913 Female, age 42, unknown 51.7
2587 Male, age 74, left hemisphere 51.7
1995 Male, age 72, unknown 48.5
Ventral tegmental area
nTPM: 65.0
1915 Female, age 42, unknown 80.9
2410 Female, age 72, unknown 77.5
2218 Male, age 76, both hemispheres 69.9
1942 Male, age 51, unknown 62.2
2021 Male, age 53, unknown 50.1
2223 Female, age 72, unknown 49.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 64.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 64.6
Samples: 139

Max nTPM: 134.9
Min nTPM: 28.0
Std nTPM: 19.9
Median nTPM: 63.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 134.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 126.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 121.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 113.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 109.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 103.2
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 96.5
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 95.8
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 94.8
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 94.0
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 93.9
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 71.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 71.6
FF:10158-103A5 76 years, female 71.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 66.0
Pig sample Sample description nTPM
Midbrain
nTPM: 61.1
Samples: 4

Max nTPM: 93.0
Min nTPM: 39.0
Sample A Female 39.0
Sample B Female 46.9
Sample C Male 93.0
Sample D Male 65.3
Periaqueductal gray
nTPM: 46.7
Samples: 3

Max nTPM: 56.3
Min nTPM: 40.8
Sample B Female 43.1
Sample C Male 56.3
Sample D Male 40.8
Substantia nigra
nTPM: 61.3
Samples: 4

Max nTPM: 86.2
Min nTPM: 40.4
Sample A Female 72.6
Sample B Female 40.4
Sample C Male 86.2
Sample D Male 45.8
Superior colliculi
nTPM: 66.0
Samples: 4

Max nTPM: 89.6
Min nTPM: 41.2
Sample A Female 59.4
Sample B Female 41.2
Sample C Male 89.6
Sample D Male 73.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 114.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 114.7
Samples: 4

Max nTPM: 121.2
Min nTPM: 112.4
Sample A Male 112.4
Sample B Male 112.4
Sample C Female 121.2
Sample D Female 112.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.9
74749970 Antisense, RP_060220_04_F08, Mouse strain C57BL/6J (56 days, male) 8.1
70191937 Antisense, RP_050512_04_H08, Mouse strain C57BL/6J (56 days, male) 7.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.