BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:62.7 nTPM
HPA:62.7 nTPM
GTEx:63.4 nTPM
FANTOM5:82.4 Scaled Tags Per Million
Pig:53.8 nTPM
Mouse:99.8 nTPM
Allen mouse:6.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA022541Antibody HPA023304
Glial cells Not detectedNot detected
Neuronal cells LowNot detected





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 62.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 42.0
2481 Female, age 94, left hemisphere 50.4
2288 Male, age 75, left hemisphere 50.2
1781 Male, age 74, unknown 46.2
2289 Male, age 61, right hemisphere 41.7
2846 Female, age 79, unknown 38.9
2290 Female, age 72, unknown 38.2
1854 Male, age 80, left hemisphere 36.5
1857 Female, age 85, left hemisphere 33.7
Claustrum
nTPM: 60.6
2568 Male, age 61, both hemispheres 74.1
2645 Female, age 72, unknown 68.4
2284 Female, age 91, both hemispheres 66.0
2198 Male, age 80, both hemispheres 61.7
2292 Female, age 85, both hemispheres 61.4
2491 Male, age 75, both hemispheres 60.3
1956 Male, age 74, unknown 55.6
2392 Female, age 94, both hemispheres 51.4
2196 Female, age 79, unknown 46.0
Globus pallidus, externus
nTPM: 62.7
2646 Male, age 61, right hemisphere 79.3
2567 Female, age 72, unknown 79.2
2772 Female, age 79, unknown 58.6
2395 Male, age 75, both hemispheres 48.7
1996 Male, age 80, right hemisphere 48.0
Globus pallidus, internus
nTPM: 58.2
2566 Female, age 72, unknown 66.2
2111 Female, age 85, right hemisphere 62.1
2778 Female, age 91, both hemispheres 58.8
1818 Male, age 74, unknown 58.5
2483 Female, age 94, right hemisphere 56.9
2287 Male, age 75, right hemisphere 54.8
2037 Male, age 80, right hemisphere 50.4
Nucleus accumbens
nTPM: 44.6
2391 Female, age 94, left hemisphere 53.5
2286 Male, age 75, left hemisphere 49.8
2824 Male, age 61, right hemisphere 48.0
1783 Male, age 74, unknown 44.9
2732 Male, age 80, right hemisphere 44.3
2698 Female, age 72, unknown 40.1
1856 Female, age 91, right hemisphere 38.6
1806 Female, age 85, left hemisphere 37.3
Nucleus basalis of Meynert
nTPM: 49.9
2569 Male, age 61, both hemispheres 74.9
2484 Female, age 94, left hemisphere 44.8
2821 Male, age 75, both hemispheres 41.4
2393 Male, age 80, right hemisphere 38.7
Nucleus of the diagonal band
nTPM: 52.1
2029 Male, age 61, right hemisphere 62.3
2775 Male, age 80, right hemisphere 54.3
2195 Female, age 85, both hemispheres 52.3
1979 Male, age 74, unknown 46.1
1812 Female, age 91, both hemispheres 45.4
Olfactory tubercle
nTPM: 56.5
2487 Female, age 94, left hemisphere 58.6
1998 Female, age 91, both hemispheres 58.4
2856 Male, age 75, right hemisphere 57.4
1846 Male, age 80, right hemisphere 51.6
Putamen
nTPM: 50.0
2647 Male, age 75, left hemisphere 73.9
2489 Female, age 72, unknown 55.5
1829 Male, age 74, unknown 49.8
2482 Female, age 94, left hemisphere 48.5
1937 Female, age 91, right hemisphere 44.0
2466 Female, age 79, unknown 43.9
1838 Male, age 80, right hemisphere 34.5
Septal nuclei
nTPM: 51.8
2394 Male, age 61, left hemisphere 59.0
2059 Female, age 85, both hemispheres 57.9
1960 Male, age 74, unknown 56.2
2031 Female, age 72, unknown 50.1
2199 Male, age 80, right hemisphere 47.2
2629 Female, age 94, right hemisphere 46.8
2009 Female, age 91, both hemispheres 45.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 63.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 60.1
Samples: 246

Max nTPM: 92.8
Min nTPM: 32.5
Std nTPM: 11.0
Median nTPM: 60.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 92.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 89.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 87.4
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 86.7
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 86.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 83.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 83.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 82.9
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 81.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 81.0
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 79.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 59.3
Samples: 246

Max nTPM: 94.2
Min nTPM: 28.7
Std nTPM: 10.2
Median nTPM: 59.1
GTEX-139TT-0011-R6b-SM-5J2ON 60-69 years, male 94.2
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 90.8
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 88.2
GTEX-ZDXO-0011-R6a-SM-4WWCT 60-69 years, male 84.2
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 81.5
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 80.4
GTEX-12ZZZ-0011-R6b-SM-5EQ5B 60-69 years, male 77.9
GTEX-17HG3-0011-R6b-SM-79OK8 30-39 years, female 77.6
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 76.6
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 75.7
GTEX-R55E-0011-R6A-SM-2TC5T 20-29 years, male 74.5
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Brain - Putamen (basal ganglia)
Average nTPM: 63.4
Samples: 205

Max nTPM: 93.5
Min nTPM: 33.4
Std nTPM: 10.9
Median nTPM: 61.6
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 93.5
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 93.4
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 92.0
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 86.6
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 85.4
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 84.8
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 84.1
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 82.4
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 82.4
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 81.7
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 81.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 82.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 55.7
FF:10164-103B2 76 years, female 55.7
Globus pallidus
Scaled Tags Per Million: 66.5
FF:10161-103A8 76 years, female 73.1
FF:10175-103C4 60 years, female 59.9
Nucleus accumbens
Scaled Tags Per Million: 82.4
FF:10037-101F1 23-56 years, mixed 82.4
Putamen
Scaled Tags Per Million: 65.4
FF:10176-103C5 60 years, female 65.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 53.8
Pig sample Sample description nTPM
Caudate
nTPM: 49.9
Samples: 4

Max nTPM: 59.9
Min nTPM: 35.5
Sample A Female 35.5
Sample B Female 54.5
Sample C Male 59.9
Sample D Male 49.7
Putamen
nTPM: 53.8
Samples: 4

Max nTPM: 67.4
Min nTPM: 40.1
Sample A Female 40.1
Sample B Female 44.3
Sample C Male 63.5
Sample D Male 67.4
Septum
nTPM: 46.3
Samples: 4

Max nTPM: 59.9
Min nTPM: 40.7
Sample A Female 43.2
Sample B Female 41.2
Sample C Male 59.9
Sample D Male 40.7
Ventral pallidum
nTPM: 53.0
Samples: 4

Max nTPM: 88.1
Min nTPM: 36.9
Sample A Female 36.9
Sample B Female 40.9
Sample C Male 88.1
Sample D Male 45.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 99.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 96.8
Samples: 4

Max nTPM: 99.9
Min nTPM: 93.6
Sample A Male 99.9
Sample B Male 93.6
Sample C Female 94.0
Sample D Female 99.7
Septum
nTPM: 99.8
Samples: 4

Max nTPM: 104.4
Min nTPM: 95.5
Sample A Male 104.4
Sample B Male 95.5
Sample C Female 98.4
Sample D Female 100.9
Ventral forebrain
nTPM: 98.7
Samples: 4

Max nTPM: 103.9
Min nTPM: 89.3
Sample A Male 98.9
Sample B Male 102.5
Sample C Female 89.3
Sample D Female 103.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 6.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 4.9
70191937 Antisense, RP_050512_04_H08, Mouse strain C57BL/6J (56 days, male) 5.3
74749970 Antisense, RP_060220_04_F08, Mouse strain C57BL/6J (56 days, male) 4.5
Pallidum
Expression energy: 6.1
74749970 Antisense, RP_060220_04_F08, Mouse strain C57BL/6J (56 days, male) 6.5
70191937 Antisense, RP_050512_04_H08, Mouse strain C57BL/6J (56 days, male) 5.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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