MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:71.4 nTPM
HPA:71.4 nTPM
GTEx:88.2 nTPM
FANTOM5:47.3 Scaled Tags Per Million
Mouse:32.5 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 71.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 67.0
2019 Male, age 18, unknown 75.4
2586 Male, age 75, left hemisphere 74.7
1827 Male, age 72, unknown 67.3
2411 Female, age 72, unknown 66.7
1830 Male, age 51, unknown 65.5
2828 Female, age 72, unknown 65.5
1833 Male, age 53, unknown 65.1
1870 Female, age 42, unknown 64.1
2666 Male, age 74, left hemisphere 63.5
2219 Male, age 76, both hemispheres 62.1
Dorsal raphe nucleus
nTPM: 68.2
2047 Male, age 72, unknown 72.6
2298 Female, age 72, unknown 71.8
1828 Male, age 53, unknown 70.2
2750 Male, age 76, both hemispheres 64.7
2016 Female, age 72, unknown 61.4
Inferior colliculus
nTPM: 69.0
1890 Male, age 53, unknown 71.3
2097 Female, age 72, unknown 69.2
1848 Female, age 42, unknown 68.0
2849 Male, age 72, unknown 67.5
Median raphe nucleus
nTPM: 69.0
2220 Male, age 76, midline 69.0
Pedunculopontine tegmental nucleus
nTPM: 67.7
2334 Male, age 80, both hemispheres 71.0
1921 Female, age 85, both hemispheres 67.1
2338 Male, age 61, both hemispheres 65.0
Periaquaductal grey, anterior
nTPM: 66.3
1795 Male, age 51, unknown 66.4
1947 Male, age 18, unknown 66.4
2502 Female, age 75, unknown 66.0
Periaquaductal grey, dorsal
nTPM: 62.3
1840 Male, age 53, unknown 62.9
2464 Female, age 72, unknown 62.9
1831 Male, age 72, unknown 61.9
2850 Male, age 76, both hemispheres 61.4
Periaquaductal grey, lateral
nTPM: 62.6
2272 Male, age 74, both hemispheres 66.2
2053 Male, age 18, unknown 62.4
2140 Male, age 76, both hemispheres 59.2
Pretectal area
nTPM: 68.0
2007 Male, age 72, unknown 78.4
1817 Female, age 42, unknown 76.2
1944 Female, age 72, unknown 76.1
1816 Male, age 51, unknown 72.8
2667 Female, age 75, unknown 68.7
1815 Male, age 53, unknown 65.6
2224 Female, age 72, unknown 64.8
2273 Male, age 74, both hemispheres 62.3
2316 Male, age 76, right hemisphere 61.7
2825 Male, age 18, unknown 61.2
2407 Male, age 75, both hemispheres 60.4
Red nucleus
nTPM: 71.4
1821 Female, age 72, unknown 79.4
2503 Female, age 72, unknown 77.3
2785 Male, age 18, unknown 74.6
2588 Male, age 74, left hemisphere 72.1
2769 Male, age 72, unknown 71.4
1954 Female, age 42, unknown 70.7
2227 Male, age 72, unknown 70.6
2725 Female, age 75, unknown 70.1
1904 Male, age 53, unknown 69.7
2823 Male, age 76, right hemisphere 68.3
1865 Male, age 51, unknown 68.0
2584 Male, age 75, left hemisphere 64.7
Substantia nigra
nTPM: 70.9
1916 Female, age 42, unknown 85.2
1941 Male, age 53, unknown 78.0
1889 Female, age 72, unknown 73.7
1851 Male, age 51, unknown 71.7
2590 Female, age 75, unknown 69.5
2665 Male, age 74, both hemispheres 68.4
2699 Male, age 18, unknown 68.4
2583 Male, age 75, right hemisphere 68.1
2409 Female, age 72, unknown 65.5
2241 Male, age 72, unknown 60.7
Superior colliculus
nTPM: 65.1
2587 Male, age 74, left hemisphere 68.7
1796 Male, age 53, unknown 66.6
1839 Male, age 51, unknown 65.7
2087 Female, age 72, unknown 65.6
2668 Female, age 75, unknown 65.5
1895 Male, age 76, right hemisphere 65.2
2664 Male, age 75, both hemispheres 63.8
1995 Male, age 72, unknown 63.4
2261 Male, age 18, unknown 63.2
1913 Female, age 42, unknown 62.9
Ventral tegmental area
nTPM: 68.7
1915 Female, age 42, unknown 76.3
2223 Female, age 72, unknown 71.1
2218 Male, age 76, both hemispheres 69.4
2410 Female, age 72, unknown 69.0
1942 Male, age 51, unknown 65.3
2021 Male, age 53, unknown 61.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 88.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 88.2
Samples: 139

Max nTPM: 188.6
Min nTPM: 25.8
Std nTPM: 30.1
Median nTPM: 83.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 188.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 173.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 159.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 151.7
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 151.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 149.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 148.0
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 145.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 140.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 138.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 137.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 47.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 47.3
FF:10158-103A5 76 years, female 47.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 32.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 32.6
Samples: 4

Max nTPM: 36.8
Min nTPM: 29.4
Sample A Male 36.8
Sample B Male 30.0
Sample C Female 29.4
Sample D Female 34.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
70598394 Antisense, RP_050412_01_H12, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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