BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:39.0 nTPM
HPA:39.0 nTPM
GTEx:34.4 nTPM
FANTOM5:75.2 Scaled Tags Per Million
Pig:22.6 nTPM
Mouse:16.0 nTPM
Allen mouse:4.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 39.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 19.0
2481 Female, age 94, left hemisphere 37.8
1781 Male, age 74, unknown 24.2
2288 Male, age 75, left hemisphere 22.2
2289 Male, age 61, right hemisphere 21.7
2290 Female, age 72, unknown 15.0
1857 Female, age 85, left hemisphere 11.6
2846 Female, age 79, unknown 10.2
1854 Male, age 80, left hemisphere 9.5
Claustrum
nTPM: 39.0
2645 Female, age 72, unknown 50.7
2568 Male, age 61, both hemispheres 48.7
2491 Male, age 75, both hemispheres 43.2
2284 Female, age 91, both hemispheres 39.3
2198 Male, age 80, both hemispheres 37.9
1956 Male, age 74, unknown 36.1
2292 Female, age 85, both hemispheres 34.9
2196 Female, age 79, unknown 32.0
2392 Female, age 94, both hemispheres 28.4
Globus pallidus, externus
nTPM: 25.4
2646 Male, age 61, right hemisphere 46.8
1996 Male, age 80, right hemisphere 25.1
2772 Female, age 79, unknown 21.2
2567 Female, age 72, unknown 18.9
2395 Male, age 75, both hemispheres 15.0
Globus pallidus, internus
nTPM: 23.0
2483 Female, age 94, right hemisphere 40.1
2287 Male, age 75, right hemisphere 27.5
1818 Male, age 74, unknown 25.5
2037 Male, age 80, right hemisphere 22.5
2778 Female, age 91, both hemispheres 15.3
2566 Female, age 72, unknown 15.0
2111 Female, age 85, right hemisphere 14.7
Nucleus accumbens
nTPM: 11.7
2286 Male, age 75, left hemisphere 21.5
2391 Female, age 94, left hemisphere 14.3
1806 Female, age 85, left hemisphere 12.3
1783 Male, age 74, unknown 11.1
2732 Male, age 80, right hemisphere 11.1
2824 Male, age 61, right hemisphere 10.5
2698 Female, age 72, unknown 7.4
1856 Female, age 91, right hemisphere 5.3
Nucleus basalis of Meynert
nTPM: 25.2
2569 Male, age 61, both hemispheres 51.7
2821 Male, age 75, both hemispheres 22.0
2484 Female, age 94, left hemisphere 20.6
2393 Male, age 80, right hemisphere 6.7
Nucleus of the diagonal band
nTPM: 25.9
2029 Male, age 61, right hemisphere 33.7
1812 Female, age 91, both hemispheres 30.8
2775 Male, age 80, right hemisphere 28.9
2195 Female, age 85, both hemispheres 26.8
1979 Male, age 74, unknown 9.5
Olfactory tubercle
nTPM: 31.5
1846 Male, age 80, right hemisphere 41.8
2856 Male, age 75, right hemisphere 31.5
1998 Female, age 91, both hemispheres 28.4
2487 Female, age 94, left hemisphere 24.4
Putamen
nTPM: 14.3
2647 Male, age 75, left hemisphere 29.4
2482 Female, age 94, left hemisphere 22.7
2489 Female, age 72, unknown 14.4
1829 Male, age 74, unknown 12.1
2466 Female, age 79, unknown 9.9
1937 Female, age 91, right hemisphere 6.1
1838 Male, age 80, right hemisphere 5.4
Septal nuclei
nTPM: 22.4
2031 Female, age 72, unknown 35.1
2009 Female, age 91, both hemispheres 27.7
2629 Female, age 94, right hemisphere 26.6
1960 Male, age 74, unknown 25.3
2059 Female, age 85, both hemispheres 18.8
2394 Male, age 61, left hemisphere 12.1
2199 Male, age 80, right hemisphere 11.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 34.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 34.4
Samples: 246

Max nTPM: 113.7
Min nTPM: 7.2
Std nTPM: 15.4
Median nTPM: 31.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 113.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 81.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 78.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 75.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 71.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 68.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 67.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 67.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 67.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 64.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 63.2
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 22.4
Samples: 246

Max nTPM: 53.8
Min nTPM: 6.4
Std nTPM: 9.3
Median nTPM: 20.9
GTEX-S7PM-0011-R6A-SM-3NM8F 60-69 years, male 53.8
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 53.0
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 52.1
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 51.7
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 50.7
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 49.3
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 47.6
GTEX-1GN2E-0011-R6b-SM-9QEII 60-69 years, male 46.3
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 45.8
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 45.6
GTEX-X4XX-0011-R6B-SM-46MWP 60-69 years, male 45.4
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 28.9
Samples: 205

Max nTPM: 73.3
Min nTPM: 5.7
Std nTPM: 13.0
Median nTPM: 27.0
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 73.3
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 66.2
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 62.5
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 60.8
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 59.1
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 58.8
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 58.6
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 57.7
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 54.3
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 53.2
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 51.8
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 75.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 44.8
FF:10164-103B2 76 years, female 44.8
Globus pallidus
Scaled Tags Per Million: 53.4
FF:10175-103C4 60 years, female 67.8
FF:10161-103A8 76 years, female 39.0
Nucleus accumbens
Scaled Tags Per Million: 75.2
FF:10037-101F1 23-56 years, mixed 75.2
Putamen
Scaled Tags Per Million: 27.6
FF:10176-103C5 60 years, female 27.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 22.6
Pig sample Sample description nTPM
Caudate
nTPM: 22.7
Samples: 4

Max nTPM: 27.0
Min nTPM: 18.8
Sample A Female 27.0
Sample B Female 20.6
Sample C Male 24.2
Sample D Male 18.8
Putamen
nTPM: 20.1
Samples: 4

Max nTPM: 29.6
Min nTPM: 14.4
Sample A Female 29.6
Sample B Female 14.4
Sample C Male 18.0
Sample D Male 18.4
Septum
nTPM: 20.7
Samples: 4

Max nTPM: 45.4
Min nTPM: 7.5
Sample A Female 19.4
Sample B Female 10.5
Sample C Male 45.4
Sample D Male 7.5
Ventral pallidum
nTPM: 18.2
Samples: 4

Max nTPM: 30.8
Min nTPM: 8.9
Sample A Female 8.9
Sample B Female 17.8
Sample C Male 30.8
Sample D Male 15.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 16.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 10.4
Samples: 4

Max nTPM: 13.8
Min nTPM: 7.0
Sample A Male 7.0
Sample B Male 9.6
Sample C Female 11.2
Sample D Female 13.8
Septum
nTPM: 8.4
Samples: 4

Max nTPM: 12.8
Min nTPM: 5.1
Sample A Male 12.8
Sample B Male 5.1
Sample C Female 6.6
Sample D Female 9.1
Ventral forebrain
nTPM: 16.0
Samples: 4

Max nTPM: 21.3
Min nTPM: 12.3
Sample A Male 21.3
Sample B Male 14.6
Sample C Female 12.3
Sample D Female 15.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 4.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.7
720 Antisense, RP_Baylor_102760, Mouse strain C57BL/6J (56 days, male) 2.7
721 Antisense, RP_Baylor_102760, Mouse strain C57BL/6J (56 days, male) 2.2
Pallidum
Expression energy: 4.2
720 Antisense, RP_Baylor_102760, Mouse strain C57BL/6J (56 days, male) 4.2
721 Antisense, RP_Baylor_102760, Mouse strain C57BL/6J (56 days, male) 2.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.