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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:116.2 nTPM
HPA:116.2 nTPM
GTEx:154.4 nTPM
FANTOM5:51.7 Scaled Tags Per Million
Pig:30.0 nTPM
Mouse:109.5 nTPM
Allen mouse:14.5 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 116.2
Sample id Sample description nTPM
Amygdala
nTPM: 116.0
2814 Male, age 76, right hemisphere 122.7
1987 Female, age 91, left hemisphere 116.0
2517 Female, age 94, left hemisphere 114.9
2514 Male, age 75, right hemisphere 113.7
2695 Female, age 67, right hemisphere 112.9
Basal amygdala
nTPM: 111.8
2609 Male, age 75, right hemisphere 122.2
2110 Male, age 80, left hemisphere 112.1
1955 Male, age 76, both hemispheres 112.0
2243 Female, age 91, right hemisphere 111.5
2685 Female, age 94, left hemisphere 111.0
2827 Female, age 67, right hemisphere 101.7
Central amygdala
nTPM: 116.2
2826 Female, age 94, left hemisphere 127.0
1905 Male, age 76, both hemispheres 118.0
2515 Male, age 75, right hemisphere 117.4
2239 Male, age 80, left hemisphere 112.2
2701 Female, age 91, right hemisphere 106.3
Corticomedial amygdala
nTPM: 110.0
2829 Male, age 80, left hemisphere 116.6
2428 Male, age 75, right hemisphere 113.9
2242 Female, age 91, right hemisphere 112.3
2535 Female, age 67, right hemisphere 108.7
2429 Female, age 94, left hemisphere 104.6
2240 Male, age 76, both hemispheres 103.9
Lateral amygdala
nTPM: 113.9
2534 Female, age 94, left hemisphere 122.1
1883 Male, age 76, both hemispheres 118.8
2516 Male, age 75, right hemisphere 118.8
2255 Female, age 91, right hemisphere 111.8
2256 Male, age 80, left hemisphere 108.9
2830 Female, age 67, right hemisphere 103.2
Stria terminalis, bed nucleus
nTPM: 109.2
1974 Female, age 91, both hemispheres 115.5
2201 Male, age 74, unknown 106.6
2486 Female, age 94, both hemispheres 105.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 154.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 154.4
Samples: 152

Max nTPM: 408.0
Min nTPM: 72.6
Std nTPM: 51.1
Median nTPM: 150.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 408.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 405.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 369.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 312.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 269.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 242.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 242.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 219.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 218.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 217.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 215.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 213.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 210.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 204.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 201.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 200.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 199.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 197.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 196.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 193.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 193.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 192.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 187.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 187.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 185.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 183.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 183.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 179.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 178.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 177.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 177.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 176.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 174.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 174.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 173.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 173.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 172.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 171.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 171.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 171.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 170.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 169.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 168.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 167.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 167.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 167.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 166.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 166.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 165.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 164.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 164.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 164.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 163.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 163.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 162.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 161.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 161.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 160.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 160.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 160.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 160.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 159.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 158.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 158.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 158.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 158.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 157.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 156.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 154.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 153.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 153.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 153.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 151.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 151.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 151.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 150.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 150.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 149.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 149.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 148.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 148.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 147.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 146.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 146.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 146.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 145.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 144.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 143.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 141.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 141.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 140.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 139.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 139.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 138.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 138.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 137.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 137.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 133.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 133.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 132.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 132.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 132.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 131.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 130.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 130.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 128.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 128.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 127.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 126.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 125.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 124.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 123.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 122.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 122.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 121.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 121.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 120.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 120.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 119.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 118.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 117.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 115.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 115.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 113.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 113.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 113.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 110.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 110.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 110.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 110.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 109.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 108.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 108.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 107.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 106.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 105.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 104.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 104.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 102.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 102.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 100.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 100.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 96.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 91.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 91.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 90.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 88.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 81.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 77.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 76.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 73.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 72.6
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 51.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 51.7
FF:10151-102I7 76 years, female 51.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 30.0
Pig sample Sample description nTPM
Amygdala
nTPM: 30.1
Samples: 4

Max nTPM: 43.9
Min nTPM: 23.0
Sample A Female 43.9
Sample B Female 26.2
Sample C Male 27.1
Sample D Male 23.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 109.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 109.5
Samples: 4

Max nTPM: 113.3
Min nTPM: 106.9
Sample A Male 106.9
Sample B Male 113.3
Sample C Female 110.1
Sample D Female 107.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 14.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 14.5
576434 Antisense, RP_040826_01_H10, Mouse strain C57BL/6J (56 days, male) 22.1
81599658 Antisense, RP_071213_04_B03, Mouse strain C57BL/6J (56 days, male) 7.0

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