MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:73.5 nTPM
HPA:73.5 nTPM
GTEx:87.7 nTPM
FANTOM5:55.6 Scaled Tags Per Million
Mouse:129.2 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 73.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 67.7
1827 Male, age 72, unknown 70.0
2411 Female, age 72, unknown 70.0
1833 Male, age 53, unknown 68.9
1870 Female, age 42, unknown 68.9
2219 Male, age 76, both hemispheres 68.8
2019 Male, age 18, unknown 66.8
2586 Male, age 75, left hemisphere 66.8
1830 Male, age 51, unknown 66.0
2828 Female, age 72, unknown 65.5
2666 Male, age 74, left hemisphere 65.2
Dorsal raphe nucleus
nTPM: 69.9
2298 Female, age 72, unknown 74.9
2750 Male, age 76, both hemispheres 70.5
2047 Male, age 72, unknown 69.2
1828 Male, age 53, unknown 68.0
2016 Female, age 72, unknown 66.7
Inferior colliculus
nTPM: 69.0
2097 Female, age 72, unknown 71.3
1890 Male, age 53, unknown 69.4
1848 Female, age 42, unknown 69.0
2849 Male, age 72, unknown 66.4
Median raphe nucleus
nTPM: 73.5
2220 Male, age 76, midline 73.5
Pedunculopontine tegmental nucleus
nTPM: 70.2
2334 Male, age 80, both hemispheres 72.6
1921 Female, age 85, both hemispheres 70.8
2338 Male, age 61, both hemispheres 67.3
Periaquaductal grey, anterior
nTPM: 69.5
1947 Male, age 18, unknown 71.4
2502 Female, age 75, unknown 69.0
1795 Male, age 51, unknown 68.1
Periaquaductal grey, dorsal
nTPM: 68.6
1840 Male, age 53, unknown 70.3
2850 Male, age 76, both hemispheres 68.8
2464 Female, age 72, unknown 68.7
1831 Male, age 72, unknown 66.7
Periaquaductal grey, lateral
nTPM: 66.8
2053 Male, age 18, unknown 67.2
2140 Male, age 76, both hemispheres 66.6
2272 Male, age 74, both hemispheres 66.5
Pretectal area
nTPM: 70.1
1816 Male, age 51, unknown 74.1
1944 Female, age 72, unknown 73.8
1817 Female, age 42, unknown 72.5
2007 Male, age 72, unknown 72.2
2667 Female, age 75, unknown 70.8
2224 Female, age 72, unknown 70.6
1815 Male, age 53, unknown 70.1
2273 Male, age 74, both hemispheres 67.3
2407 Male, age 75, both hemispheres 67.1
2825 Male, age 18, unknown 67.1
2316 Male, age 76, right hemisphere 65.6
Red nucleus
nTPM: 66.4
1821 Female, age 72, unknown 70.7
2725 Female, age 75, unknown 67.4
2503 Female, age 72, unknown 67.0
1904 Male, age 53, unknown 66.5
2823 Male, age 76, right hemisphere 66.5
2584 Male, age 75, left hemisphere 66.4
1954 Female, age 42, unknown 66.2
2785 Male, age 18, unknown 65.7
2769 Male, age 72, unknown 65.6
2227 Male, age 72, unknown 65.5
1865 Male, age 51, unknown 65.3
2588 Male, age 74, left hemisphere 63.6
Substantia nigra
nTPM: 72.9
2241 Male, age 72, unknown 79.8
1916 Female, age 42, unknown 79.7
1851 Male, age 51, unknown 77.2
2699 Male, age 18, unknown 74.1
1889 Female, age 72, unknown 73.9
1941 Male, age 53, unknown 72.7
2409 Female, age 72, unknown 71.2
2665 Male, age 74, both hemispheres 67.7
2590 Female, age 75, unknown 67.5
2583 Male, age 75, right hemisphere 65.4
Superior colliculus
nTPM: 68.0
2087 Female, age 72, unknown 72.0
2668 Female, age 75, unknown 70.7
2587 Male, age 74, left hemisphere 69.2
1796 Male, age 53, unknown 68.7
2261 Male, age 18, unknown 68.6
1895 Male, age 76, right hemisphere 68.5
1913 Female, age 42, unknown 67.3
1839 Male, age 51, unknown 66.2
1995 Male, age 72, unknown 65.4
2664 Male, age 75, both hemispheres 63.6
Ventral tegmental area
nTPM: 73.2
2410 Female, age 72, unknown 77.3
1915 Female, age 42, unknown 76.4
2218 Male, age 76, both hemispheres 76.3
1942 Male, age 51, unknown 71.7
2021 Male, age 53, unknown 69.1
2223 Female, age 72, unknown 68.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 87.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 87.7
Samples: 139

Max nTPM: 172.4
Min nTPM: 43.3
Std nTPM: 24.7
Median nTPM: 84.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 172.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 159.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 148.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 143.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 141.9
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 133.4
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 132.0
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 130.9
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 129.5
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 126.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 126.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 55.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 55.6
FF:10158-103A5 76 years, female 55.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 129.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 129.2
Samples: 4

Max nTPM: 141.1
Min nTPM: 115.1
Sample A Male 137.8
Sample B Male 122.8
Sample C Female 115.1
Sample D Female 141.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
69352932 Antisense, RP_050412_01_D10, Mouse strain C57BL/6J (56 days, male) 0.2

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