We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
CTDNEP1
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • CTDNEP1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:53.0 nTPM
HPA:53.0 nTPM
GTEx:88.4 nTPM
FANTOM5:169.7 Scaled Tags Per Million
Pig:25.1 nTPM
Mouse:85.7 nTPM
Allen mouse:7.5 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 53.0
Sample id Sample description nTPM
Amygdala
nTPM: 51.9
2695 Female, age 67, right hemisphere 57.2
2514 Male, age 75, right hemisphere 51.8
2814 Male, age 76, right hemisphere 51.8
2517 Female, age 94, left hemisphere 50.7
1987 Female, age 91, left hemisphere 47.8
Basal amygdala
nTPM: 50.8
2609 Male, age 75, right hemisphere 54.8
2827 Female, age 67, right hemisphere 54.4
2685 Female, age 94, left hemisphere 50.8
2243 Female, age 91, right hemisphere 48.8
1955 Male, age 76, both hemispheres 48.5
2110 Male, age 80, left hemisphere 47.5
Central amygdala
nTPM: 52.2
2826 Female, age 94, left hemisphere 58.4
2515 Male, age 75, right hemisphere 53.5
1905 Male, age 76, both hemispheres 50.3
2239 Male, age 80, left hemisphere 49.7
2701 Female, age 91, right hemisphere 49.0
Corticomedial amygdala
nTPM: 48.7
2535 Female, age 67, right hemisphere 51.1
2428 Male, age 75, right hemisphere 51.0
2829 Male, age 80, left hemisphere 49.0
2240 Male, age 76, both hemispheres 47.6
2242 Female, age 91, right hemisphere 47.1
2429 Female, age 94, left hemisphere 46.4
Lateral amygdala
nTPM: 53.0
2830 Female, age 67, right hemisphere 56.8
2516 Male, age 75, right hemisphere 53.8
2256 Male, age 80, left hemisphere 53.4
2534 Female, age 94, left hemisphere 53.1
2255 Female, age 91, right hemisphere 50.7
1883 Male, age 76, both hemispheres 50.1
Stria terminalis, bed nucleus
nTPM: 45.7
2201 Male, age 74, unknown 47.2
1974 Female, age 91, both hemispheres 45.7
2486 Female, age 94, both hemispheres 44.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 88.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 88.4
Samples: 152

Max nTPM: 143.5
Min nTPM: 59.4
Std nTPM: 13.3
Median nTPM: 88.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 143.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 129.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 122.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 111.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 109.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 109.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 109.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 109.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 107.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 107.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 106.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 106.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 105.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 105.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 105.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 104.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 103.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 102.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 102.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 102.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 102.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 102.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 101.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 100.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 100.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 100.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 100.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 100.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 99.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 99.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 98.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 98.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 97.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 97.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 97.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 97.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 96.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 96.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 96.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 96.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 95.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 95.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 95.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 95.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 95.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 94.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 94.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 94.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 93.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 93.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 93.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 93.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 92.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 92.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 92.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 92.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 92.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 92.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 92.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 92.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 91.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 91.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 91.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 91.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 91.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 91.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 90.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 90.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 90.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 90.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 90.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 89.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 89.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 89.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 88.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 88.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 88.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 88.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 88.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 88.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 87.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 87.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 87.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 87.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 87.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 87.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 86.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 86.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 85.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 85.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 85.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 85.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 85.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 85.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 85.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 85.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 84.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 84.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 83.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 83.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 83.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 83.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 82.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 82.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 81.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 81.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 81.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 81.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 80.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 80.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 80.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 80.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 80.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 79.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 79.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 79.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 79.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 79.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 78.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 78.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 77.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 77.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 76.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 75.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 75.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 75.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 74.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 74.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 74.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 73.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 73.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 72.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 72.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 72.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 72.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 71.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 70.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 70.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 70.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 69.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 69.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 68.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 67.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 66.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 66.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 66.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 65.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 64.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 64.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 62.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 61.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 59.4
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 169.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 169.7
FF:10151-102I7 76 years, female 169.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 25.1
Pig sample Sample description nTPM
Amygdala
nTPM: 25.1
Samples: 4

Max nTPM: 31.9
Min nTPM: 21.6
Sample A Female 31.9
Sample B Female 24.5
Sample C Male 22.2
Sample D Male 21.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 85.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 85.7
Samples: 4

Max nTPM: 99.2
Min nTPM: 72.3
Sample A Male 72.3
Sample B Male 80.6
Sample C Female 99.2
Sample D Female 90.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 7.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 7.5
70473867 Antisense, RP_050614_04_D08, Mouse strain C57BL/6J (56 days, male) 7.5

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.