MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:16.3 nTPM
HPA:16.3 nTPM
GTEx:31.3 nTPM
FANTOM5:18.8 Scaled Tags Per Million
Pig:3.9 nTPM
Mouse:0.7 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 16.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 13.5
2586 Male, age 75, left hemisphere 16.9
2828 Female, age 72, unknown 15.6
1870 Female, age 42, unknown 14.9
2666 Male, age 74, left hemisphere 14.7
1827 Male, age 72, unknown 13.8
1833 Male, age 53, unknown 13.3
2411 Female, age 72, unknown 12.4
1830 Male, age 51, unknown 12.0
2019 Male, age 18, unknown 11.4
2219 Male, age 76, both hemispheres 9.7
Dorsal raphe nucleus
nTPM: 14.4
2016 Female, age 72, unknown 16.0
2047 Male, age 72, unknown 15.0
2298 Female, age 72, unknown 14.5
1828 Male, age 53, unknown 13.4
2750 Male, age 76, both hemispheres 13.1
Inferior colliculus
nTPM: 14.7
1890 Male, age 53, unknown 16.3
2849 Male, age 72, unknown 16.2
2097 Female, age 72, unknown 13.7
1848 Female, age 42, unknown 12.6
Median raphe nucleus
nTPM: 13.6
2220 Male, age 76, midline 13.6
Pedunculopontine tegmental nucleus
nTPM: 13.4
2338 Male, age 61, both hemispheres 15.8
2334 Male, age 80, both hemispheres 14.1
1921 Female, age 85, both hemispheres 10.3
Periaquaductal grey, anterior
nTPM: 14.7
1795 Male, age 51, unknown 16.6
2502 Female, age 75, unknown 16.5
1947 Male, age 18, unknown 10.9
Periaquaductal grey, dorsal
nTPM: 15.8
2850 Male, age 76, both hemispheres 16.9
1840 Male, age 53, unknown 16.3
1831 Male, age 72, unknown 15.8
2464 Female, age 72, unknown 14.0
Periaquaductal grey, lateral
nTPM: 16.3
2053 Male, age 18, unknown 18.1
2140 Male, age 76, both hemispheres 17.3
2272 Male, age 74, both hemispheres 13.5
Pretectal area
nTPM: 14.5
1816 Male, age 51, unknown 18.8
1944 Female, age 72, unknown 15.7
2273 Male, age 74, both hemispheres 15.6
2667 Female, age 75, unknown 15.2
2316 Male, age 76, right hemisphere 14.9
2407 Male, age 75, both hemispheres 14.6
2825 Male, age 18, unknown 14.3
1815 Male, age 53, unknown 13.3
2224 Female, age 72, unknown 13.1
1817 Female, age 42, unknown 13.0
2007 Male, age 72, unknown 10.9
Red nucleus
nTPM: 11.7
2588 Male, age 74, left hemisphere 13.7
2584 Male, age 75, left hemisphere 13.5
2823 Male, age 76, right hemisphere 12.5
2769 Male, age 72, unknown 12.2
1904 Male, age 53, unknown 12.1
2785 Male, age 18, unknown 11.8
1954 Female, age 42, unknown 11.5
2227 Male, age 72, unknown 11.4
1821 Female, age 72, unknown 11.1
2503 Female, age 72, unknown 10.9
2725 Female, age 75, unknown 10.4
1865 Male, age 51, unknown 10.0
Substantia nigra
nTPM: 12.4
2409 Female, age 72, unknown 13.5
2699 Male, age 18, unknown 13.3
2583 Male, age 75, right hemisphere 13.1
1889 Female, age 72, unknown 12.7
1916 Female, age 42, unknown 12.7
2590 Female, age 75, unknown 12.7
2665 Male, age 74, both hemispheres 12.2
1851 Male, age 51, unknown 11.6
1941 Male, age 53, unknown 11.1
2241 Male, age 72, unknown 10.8
Superior colliculus
nTPM: 15.3
2261 Male, age 18, unknown 19.7
1995 Male, age 72, unknown 18.6
2664 Male, age 75, both hemispheres 16.6
1913 Female, age 42, unknown 16.5
1839 Male, age 51, unknown 14.6
1796 Male, age 53, unknown 14.1
2087 Female, age 72, unknown 13.8
2668 Female, age 75, unknown 13.6
1895 Male, age 76, right hemisphere 12.9
2587 Male, age 74, left hemisphere 12.4
Ventral tegmental area
nTPM: 12.5
2021 Male, age 53, unknown 14.2
2218 Male, age 76, both hemispheres 13.6
1915 Female, age 42, unknown 13.1
1942 Male, age 51, unknown 12.0
2410 Female, age 72, unknown 11.3
2223 Female, age 72, unknown 10.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 31.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.3
Samples: 139

Max nTPM: 100.8
Min nTPM: 8.0
Std nTPM: 16.6
Median nTPM: 26.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 100.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 88.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 80.0
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 78.9
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 78.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 71.6
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 64.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 63.7
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 63.0
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 61.4
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 58.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.8
FF:10158-103A5 76 years, female 18.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 3.9
Pig sample Sample description nTPM
Midbrain
nTPM: 3.3
Samples: 4

Max nTPM: 9.6
Min nTPM: 0.7
Sample A Female 9.6
Sample B Female 1.1
Sample C Male 1.6
Sample D Male 0.7
Periaqueductal gray
nTPM: 0.7
Samples: 3

Max nTPM: 1.0
Min nTPM: 0.6
Sample B Female 0.6
Sample C Male 0.6
Sample D Male 1.0
Substantia nigra
nTPM: 2.6
Samples: 4

Max nTPM: 3.4
Min nTPM: 1.8
Sample A Female 1.8
Sample B Female 3.4
Sample C Male 1.8
Sample D Male 3.2
Superior colliculi
nTPM: 3.9
Samples: 4

Max nTPM: 8.4
Min nTPM: 1.5
Sample A Female 3.7
Sample B Female 8.4
Sample C Male 1.9
Sample D Male 1.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.7
Samples: 4

Max nTPM: 0.9
Min nTPM: 0.6
Sample A Male 0.6
Sample B Male 0.9
Sample C Female 0.6
Sample D Female 0.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
68191570 Antisense, RP_041129_01_D10, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.