BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:21.0 nTPM
HPA:21.0 nTPM
GTEx:24.6 nTPM
FANTOM5:47.8 Scaled Tags Per Million
Pig:11.9 nTPM
Mouse:27.7 nTPM
Allen mouse:0.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA046315
Glial cells Not detected
Neuronal cells Not detected


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 21.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 20.6
2846 Female, age 79, unknown 22.7
2288 Male, age 75, left hemisphere 22.0
1854 Male, age 80, left hemisphere 20.9
1857 Female, age 85, left hemisphere 20.1
2289 Male, age 61, right hemisphere 20.1
1781 Male, age 74, unknown 20.0
2290 Female, age 72, unknown 19.9
2481 Female, age 94, left hemisphere 19.6
Claustrum
nTPM: 20.6
1956 Male, age 74, unknown 21.8
2491 Male, age 75, both hemispheres 21.1
2645 Female, age 72, unknown 21.0
2292 Female, age 85, both hemispheres 20.7
2568 Male, age 61, both hemispheres 20.7
2284 Female, age 91, both hemispheres 20.4
2392 Female, age 94, both hemispheres 20.3
2198 Male, age 80, both hemispheres 19.9
2196 Female, age 79, unknown 19.8
Globus pallidus, externus
nTPM: 20.1
2646 Male, age 61, right hemisphere 20.7
2395 Male, age 75, both hemispheres 20.5
2772 Female, age 79, unknown 20.2
2567 Female, age 72, unknown 19.7
1996 Male, age 80, right hemisphere 19.4
Globus pallidus, internus
nTPM: 21.0
2287 Male, age 75, right hemisphere 22.7
2778 Female, age 91, both hemispheres 22.1
1818 Male, age 74, unknown 21.4
2111 Female, age 85, right hemisphere 20.7
2037 Male, age 80, right hemisphere 20.6
2566 Female, age 72, unknown 20.5
2483 Female, age 94, right hemisphere 19.3
Nucleus accumbens
nTPM: 20.7
1856 Female, age 91, right hemisphere 21.6
1783 Male, age 74, unknown 20.9
2824 Male, age 61, right hemisphere 20.8
1806 Female, age 85, left hemisphere 20.7
2286 Male, age 75, left hemisphere 20.7
2732 Male, age 80, right hemisphere 20.7
2698 Female, age 72, unknown 20.2
2391 Female, age 94, left hemisphere 19.9
Nucleus basalis of Meynert
nTPM: 20.0
2393 Male, age 80, right hemisphere 20.7
2484 Female, age 94, left hemisphere 20.7
2821 Male, age 75, both hemispheres 19.6
2569 Male, age 61, both hemispheres 19.3
Nucleus of the diagonal band
nTPM: 20.8
2195 Female, age 85, both hemispheres 21.6
2029 Male, age 61, right hemisphere 21.2
1979 Male, age 74, unknown 21.0
2775 Male, age 80, right hemisphere 20.4
1812 Female, age 91, both hemispheres 19.8
Olfactory tubercle
nTPM: 21.0
1998 Female, age 91, both hemispheres 21.7
2856 Male, age 75, right hemisphere 21.2
1846 Male, age 80, right hemisphere 21.0
2487 Female, age 94, left hemisphere 20.1
Putamen
nTPM: 20.6
1838 Male, age 80, right hemisphere 22.9
2466 Female, age 79, unknown 21.6
1829 Male, age 74, unknown 20.7
2489 Female, age 72, unknown 20.7
2482 Female, age 94, left hemisphere 19.6
1937 Female, age 91, right hemisphere 19.5
2647 Male, age 75, left hemisphere 18.9
Septal nuclei
nTPM: 20.2
2199 Male, age 80, right hemisphere 21.4
2031 Female, age 72, unknown 20.9
2009 Female, age 91, both hemispheres 20.7
2394 Male, age 61, left hemisphere 20.1
1960 Male, age 74, unknown 19.7
2629 Female, age 94, right hemisphere 19.6
2059 Female, age 85, both hemispheres 18.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 24.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 21.6
Samples: 246

Max nTPM: 46.7
Min nTPM: 7.7
Std nTPM: 6.3
Median nTPM: 20.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 46.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 45.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 43.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 42.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 39.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 39.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 37.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 35.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 35.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 34.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 33.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 20.2
Samples: 246

Max nTPM: 45.6
Min nTPM: 10.1
Std nTPM: 5.4
Median nTPM: 19.7
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 45.6
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 40.7
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 36.0
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 35.7
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 35.5
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 33.6
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 32.3
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 31.3
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 30.5
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 30.1
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 29.9
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Brain - Putamen (basal ganglia)
Average nTPM: 24.6
Samples: 205

Max nTPM: 53.7
Min nTPM: 10.8
Std nTPM: 7.1
Median nTPM: 23.9
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 53.7
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 49.7
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 48.9
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 48.7
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 44.4
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 40.5
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 39.1
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 38.7
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 38.6
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 38.4
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 37.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 47.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 45.4
FF:10164-103B2 76 years, female 45.4
Globus pallidus
Scaled Tags Per Million: 43.3
FF:10175-103C4 60 years, female 46.5
FF:10161-103A8 76 years, female 40.1
Nucleus accumbens
Scaled Tags Per Million: 33.4
FF:10037-101F1 23-56 years, mixed 33.4
Putamen
Scaled Tags Per Million: 47.8
FF:10176-103C5 60 years, female 47.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 11.9
Pig sample Sample description nTPM
Caudate
nTPM: 10.8
Samples: 4

Max nTPM: 11.5
Min nTPM: 9.9
Sample A Female 9.9
Sample B Female 11.1
Sample C Male 10.5
Sample D Male 11.5
Putamen
nTPM: 11.8
Samples: 4

Max nTPM: 13.1
Min nTPM: 11.0
Sample A Female 13.1
Sample B Female 11.2
Sample C Male 11.8
Sample D Male 11.0
Septum
nTPM: 11.9
Samples: 4

Max nTPM: 12.4
Min nTPM: 11.2
Sample A Female 11.5
Sample B Female 11.2
Sample C Male 12.4
Sample D Male 12.4
Ventral pallidum
nTPM: 11.4
Samples: 4

Max nTPM: 12.8
Min nTPM: 10.0
Sample A Female 10.0
Sample B Female 11.9
Sample C Male 12.8
Sample D Male 10.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 27.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 27.7
Samples: 4

Max nTPM: 29.9
Min nTPM: 24.2
Sample A Male 29.7
Sample B Male 27.0
Sample C Female 24.2
Sample D Female 29.9
Septum
nTPM: 23.0
Samples: 4

Max nTPM: 25.0
Min nTPM: 21.0
Sample A Male 21.7
Sample B Male 25.0
Sample C Female 24.4
Sample D Female 21.0
Ventral forebrain
nTPM: 20.6
Samples: 4

Max nTPM: 20.9
Min nTPM: 20.2
Sample A Male 20.9
Sample B Male 20.6
Sample C Female 20.5
Sample D Female 20.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
70305389 Antisense, RP_050609_04_A12, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.1
70305389 Antisense, RP_050609_04_A12, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

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