MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:420.4 nTPM
HPA:420.4 nTPM
GTEx:578.4 nTPM
FANTOM5:228.1 Scaled Tags Per Million
Pig:536.8 nTPM
Mouse:488.9 nTPM
Allen mouse:5.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 420.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 397.6
2019 Male, age 18, unknown 434.7
2586 Male, age 75, left hemisphere 408.9
2411 Female, age 72, unknown 407.4
1827 Male, age 72, unknown 405.3
2828 Female, age 72, unknown 401.9
2219 Male, age 76, both hemispheres 389.5
1870 Female, age 42, unknown 388.8
2666 Male, age 74, left hemisphere 387.4
1833 Male, age 53, unknown 381.2
1830 Male, age 51, unknown 371.3
Dorsal raphe nucleus
nTPM: 408.7
2298 Female, age 72, unknown 447.8
1828 Male, age 53, unknown 419.0
2047 Male, age 72, unknown 403.4
2750 Male, age 76, both hemispheres 390.6
2016 Female, age 72, unknown 382.4
Inferior colliculus
nTPM: 408.7
2097 Female, age 72, unknown 445.0
1890 Male, age 53, unknown 425.6
1848 Female, age 42, unknown 391.6
2849 Male, age 72, unknown 372.6
Median raphe nucleus
nTPM: 380.1
2220 Male, age 76, midline 380.1
Pedunculopontine tegmental nucleus
nTPM: 406.6
1921 Female, age 85, both hemispheres 419.5
2334 Male, age 80, both hemispheres 415.8
2338 Male, age 61, both hemispheres 384.3
Periaquaductal grey, anterior
nTPM: 402.3
2502 Female, age 75, unknown 407.9
1795 Male, age 51, unknown 399.5
1947 Male, age 18, unknown 399.5
Periaquaductal grey, dorsal
nTPM: 383.7
1831 Male, age 72, unknown 386.8
1840 Male, age 53, unknown 384.4
2850 Male, age 76, both hemispheres 382.7
2464 Female, age 72, unknown 380.9
Periaquaductal grey, lateral
nTPM: 381.6
2272 Male, age 74, both hemispheres 385.1
2053 Male, age 18, unknown 382.6
2140 Male, age 76, both hemispheres 377.1
Pretectal area
nTPM: 420.4
2007 Male, age 72, unknown 477.6
1816 Male, age 51, unknown 469.4
1817 Female, age 42, unknown 460.3
1815 Male, age 53, unknown 431.6
2667 Female, age 75, unknown 429.7
1944 Female, age 72, unknown 428.6
2273 Male, age 74, both hemispheres 401.4
2224 Female, age 72, unknown 393.6
2316 Male, age 76, right hemisphere 393.6
2825 Male, age 18, unknown 382.2
2407 Male, age 75, both hemispheres 356.0
Red nucleus
nTPM: 416.7
1821 Female, age 72, unknown 475.6
2503 Female, age 72, unknown 427.2
2785 Male, age 18, unknown 425.9
2588 Male, age 74, left hemisphere 419.0
2823 Male, age 76, right hemisphere 414.2
2769 Male, age 72, unknown 413.5
2227 Male, age 72, unknown 413.4
2725 Female, age 75, unknown 413.3
1904 Male, age 53, unknown 413.0
1954 Female, age 42, unknown 406.0
1865 Male, age 51, unknown 403.7
2584 Male, age 75, left hemisphere 375.9
Substantia nigra
nTPM: 420.4
1916 Female, age 42, unknown 462.9
1851 Male, age 51, unknown 456.1
1889 Female, age 72, unknown 440.1
2665 Male, age 74, both hemispheres 434.4
1941 Male, age 53, unknown 414.1
2590 Female, age 75, unknown 403.7
2699 Male, age 18, unknown 403.6
2241 Male, age 72, unknown 400.4
2409 Female, age 72, unknown 398.4
2583 Male, age 75, right hemisphere 390.8
Superior colliculus
nTPM: 400.0
2087 Female, age 72, unknown 416.8
1796 Male, age 53, unknown 412.5
2587 Male, age 74, left hemisphere 406.8
2261 Male, age 18, unknown 405.0
1895 Male, age 76, right hemisphere 404.6
1995 Male, age 72, unknown 401.1
2668 Female, age 75, unknown 397.1
1913 Female, age 42, unknown 392.9
1839 Male, age 51, unknown 385.9
2664 Male, age 75, both hemispheres 377.3
Ventral tegmental area
nTPM: 409.9
1915 Female, age 42, unknown 444.8
2410 Female, age 72, unknown 429.4
2223 Female, age 72, unknown 408.0
2218 Male, age 76, both hemispheres 404.9
1942 Male, age 51, unknown 395.2
2021 Male, age 53, unknown 377.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 578.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 578.4
Samples: 139

Max nTPM: 1152.0
Min nTPM: 249.5
Std nTPM: 154.2
Median nTPM: 566.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 1152.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 938.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 922.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 919.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 885.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 881.2
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 870.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 863.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 830.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 830.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 830.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 228.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 228.1
FF:10158-103A5 76 years, female 228.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 536.8
Pig sample Sample description nTPM
Midbrain
nTPM: 475.7
Samples: 4

Max nTPM: 556.7
Min nTPM: 406.1
Sample A Female 509.0
Sample B Female 406.1
Sample C Male 556.7
Sample D Male 430.8
Periaqueductal gray
nTPM: 345.9
Samples: 3

Max nTPM: 383.5
Min nTPM: 302.7
Sample B Female 351.4
Sample C Male 383.5
Sample D Male 302.7
Substantia nigra
nTPM: 431.4
Samples: 4

Max nTPM: 657.3
Min nTPM: 291.8
Sample A Female 657.3
Sample B Female 356.4
Sample C Male 420.2
Sample D Male 291.8
Superior colliculi
nTPM: 536.8
Samples: 4

Max nTPM: 671.1
Min nTPM: 427.2
Sample A Female 671.1
Sample B Female 462.2
Sample C Male 586.6
Sample D Male 427.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 488.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 488.9
Samples: 4

Max nTPM: 535.4
Min nTPM: 461.0
Sample A Male 535.4
Sample B Male 486.8
Sample C Female 461.0
Sample D Female 472.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.3
69568986 Antisense, RP_050426_03_C02, Mouse strain C57BL/6J (56 days, male) 5.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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