MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:61.1 nTPM
HPA:61.1 nTPM
GTEx:39.8 nTPM
FANTOM5:87.8 Scaled Tags Per Million
Mouse:62.9 nTPM
Allen mouse:2.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 61.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 43.9
1830 Male, age 51, unknown 56.8
2586 Male, age 75, left hemisphere 54.4
1833 Male, age 53, unknown 53.4
2411 Female, age 72, unknown 50.8
1870 Female, age 42, unknown 48.8
2019 Male, age 18, unknown 43.6
2828 Female, age 72, unknown 43.0
1827 Male, age 72, unknown 30.7
2666 Male, age 74, left hemisphere 30.2
2219 Male, age 76, both hemispheres 26.8
Dorsal raphe nucleus
nTPM: 30.1
2750 Male, age 76, both hemispheres 55.7
2016 Female, age 72, unknown 36.8
1828 Male, age 53, unknown 27.8
2047 Male, age 72, unknown 15.8
2298 Female, age 72, unknown 14.4
Inferior colliculus
nTPM: 25.4
2849 Male, age 72, unknown 32.3
1848 Female, age 42, unknown 26.8
1890 Male, age 53, unknown 25.9
2097 Female, age 72, unknown 16.6
Median raphe nucleus
nTPM: 14.0
2220 Male, age 76, midline 14.0
Pedunculopontine tegmental nucleus
nTPM: 25.5
2334 Male, age 80, both hemispheres 31.7
1921 Female, age 85, both hemispheres 27.6
2338 Male, age 61, both hemispheres 17.0
Periaquaductal grey, anterior
nTPM: 26.0
1947 Male, age 18, unknown 28.8
2502 Female, age 75, unknown 28.6
1795 Male, age 51, unknown 20.5
Periaquaductal grey, dorsal
nTPM: 17.9
2464 Female, age 72, unknown 31.1
1831 Male, age 72, unknown 17.8
1840 Male, age 53, unknown 12.5
2850 Male, age 76, both hemispheres 10.4
Periaquaductal grey, lateral
nTPM: 22.1
2272 Male, age 74, both hemispheres 32.3
2053 Male, age 18, unknown 22.3
2140 Male, age 76, both hemispheres 11.8
Pretectal area
nTPM: 26.5
2316 Male, age 76, right hemisphere 44.9
2407 Male, age 75, both hemispheres 40.7
1815 Male, age 53, unknown 37.2
2825 Male, age 18, unknown 30.8
2007 Male, age 72, unknown 26.5
1817 Female, age 42, unknown 26.4
2273 Male, age 74, both hemispheres 21.6
2224 Female, age 72, unknown 21.5
2667 Female, age 75, unknown 18.3
1816 Male, age 51, unknown 11.8
1944 Female, age 72, unknown 11.5
Red nucleus
nTPM: 61.1
2769 Male, age 72, unknown 69.9
1904 Male, age 53, unknown 69.5
2785 Male, age 18, unknown 68.7
2823 Male, age 76, right hemisphere 66.7
1865 Male, age 51, unknown 65.7
2227 Male, age 72, unknown 65.3
2503 Female, age 72, unknown 63.6
2588 Male, age 74, left hemisphere 57.8
1954 Female, age 42, unknown 55.1
1821 Female, age 72, unknown 52.9
2584 Male, age 75, left hemisphere 49.4
2725 Female, age 75, unknown 48.8
Substantia nigra
nTPM: 30.0
2583 Male, age 75, right hemisphere 60.0
2590 Female, age 75, unknown 44.6
1851 Male, age 51, unknown 34.9
2699 Male, age 18, unknown 32.0
2409 Female, age 72, unknown 30.7
1889 Female, age 72, unknown 27.5
1916 Female, age 42, unknown 19.3
1941 Male, age 53, unknown 17.5
2665 Male, age 74, both hemispheres 17.0
2241 Male, age 72, unknown 16.9
Superior colliculus
nTPM: 37.7
1995 Male, age 72, unknown 66.5
1913 Female, age 42, unknown 55.7
1895 Male, age 76, right hemisphere 51.0
1839 Male, age 51, unknown 42.9
2587 Male, age 74, left hemisphere 36.0
2668 Female, age 75, unknown 32.4
2664 Male, age 75, both hemispheres 31.3
1796 Male, age 53, unknown 30.4
2261 Male, age 18, unknown 16.9
2087 Female, age 72, unknown 13.5
Ventral tegmental area
nTPM: 31.6
2410 Female, age 72, unknown 40.6
2223 Female, age 72, unknown 36.1
1942 Male, age 51, unknown 31.9
2021 Male, age 53, unknown 29.8
1915 Female, age 42, unknown 27.7
2218 Male, age 76, both hemispheres 23.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 39.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 39.8
Samples: 139

Max nTPM: 154.8
Min nTPM: 9.0
Std nTPM: 26.4
Median nTPM: 31.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 154.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 150.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 123.8
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 108.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 105.9
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 98.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 95.3
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 94.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 91.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 90.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 89.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 87.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 87.8
FF:10158-103A5 76 years, female 87.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 62.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 62.9
Samples: 4

Max nTPM: 69.8
Min nTPM: 58.7
Sample A Male 69.8
Sample B Male 58.7
Sample C Female 60.0
Sample D Female 63.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.0
69447782 Antisense, RP_050419_02_A12, Mouse strain C57BL/6J (56 days, male) 2.0

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