MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:87.9 nTPM
HPA:87.9 nTPM
GTEx:83.0 nTPM
FANTOM5:130.4 Scaled Tags Per Million
Mouse:27.2 nTPM
Allen mouse:2.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 87.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 73.6
2586 Male, age 75, left hemisphere 97.3
2019 Male, age 18, unknown 94.3
2828 Female, age 72, unknown 77.9
1830 Male, age 51, unknown 72.2
1833 Male, age 53, unknown 70.9
2411 Female, age 72, unknown 68.5
1870 Female, age 42, unknown 65.5
2666 Male, age 74, left hemisphere 65.4
2219 Male, age 76, both hemispheres 62.6
1827 Male, age 72, unknown 61.6
Dorsal raphe nucleus
nTPM: 52.5
2750 Male, age 76, both hemispheres 69.5
1828 Male, age 53, unknown 59.8
2016 Female, age 72, unknown 47.2
2047 Male, age 72, unknown 46.8
2298 Female, age 72, unknown 39.0
Inferior colliculus
nTPM: 61.0
1890 Male, age 53, unknown 77.7
2097 Female, age 72, unknown 59.7
1848 Female, age 42, unknown 55.3
2849 Male, age 72, unknown 51.1
Median raphe nucleus
nTPM: 48.5
2220 Male, age 76, midline 48.5
Pedunculopontine tegmental nucleus
nTPM: 50.1
2334 Male, age 80, both hemispheres 57.2
1921 Female, age 85, both hemispheres 49.5
2338 Male, age 61, both hemispheres 43.8
Periaquaductal grey, anterior
nTPM: 49.1
2502 Female, age 75, unknown 55.5
1795 Male, age 51, unknown 50.1
1947 Male, age 18, unknown 41.7
Periaquaductal grey, dorsal
nTPM: 41.4
2464 Female, age 72, unknown 53.4
1831 Male, age 72, unknown 47.7
1840 Male, age 53, unknown 34.5
2850 Male, age 76, both hemispheres 29.8
Periaquaductal grey, lateral
nTPM: 39.7
2053 Male, age 18, unknown 46.0
2272 Male, age 74, both hemispheres 44.6
2140 Male, age 76, both hemispheres 28.4
Pretectal area
nTPM: 59.9
1817 Female, age 42, unknown 80.4
1815 Male, age 53, unknown 73.7
2007 Male, age 72, unknown 73.0
1816 Male, age 51, unknown 70.9
1944 Female, age 72, unknown 68.9
2407 Male, age 75, both hemispheres 62.7
2667 Female, age 75, unknown 62.5
2316 Male, age 76, right hemisphere 44.9
2825 Male, age 18, unknown 44.2
2273 Male, age 74, both hemispheres 41.9
2224 Female, age 72, unknown 35.9
Red nucleus
nTPM: 87.9
2823 Male, age 76, right hemisphere 97.8
2588 Male, age 74, left hemisphere 97.4
1904 Male, age 53, unknown 93.7
2227 Male, age 72, unknown 93.7
2785 Male, age 18, unknown 93.0
2584 Male, age 75, left hemisphere 92.8
2769 Male, age 72, unknown 91.4
1865 Male, age 51, unknown 88.7
1821 Female, age 72, unknown 84.4
2503 Female, age 72, unknown 84.4
1954 Female, age 42, unknown 80.3
2725 Female, age 75, unknown 57.6
Substantia nigra
nTPM: 62.4
2583 Male, age 75, right hemisphere 86.7
2665 Male, age 74, both hemispheres 76.7
1889 Female, age 72, unknown 65.7
2590 Female, age 75, unknown 62.7
1851 Male, age 51, unknown 61.4
1916 Female, age 42, unknown 58.8
2699 Male, age 18, unknown 58.8
2409 Female, age 72, unknown 53.1
1941 Male, age 53, unknown 52.7
2241 Male, age 72, unknown 47.4
Superior colliculus
nTPM: 65.1
2668 Female, age 75, unknown 77.0
1995 Male, age 72, unknown 75.2
2664 Male, age 75, both hemispheres 72.7
2087 Female, age 72, unknown 69.2
1913 Female, age 42, unknown 69.0
2261 Male, age 18, unknown 62.9
2587 Male, age 74, left hemisphere 62.1
1839 Male, age 51, unknown 56.5
1796 Male, age 53, unknown 54.4
1895 Male, age 76, right hemisphere 52.2
Ventral tegmental area
nTPM: 60.7
2223 Female, age 72, unknown 91.7
2410 Female, age 72, unknown 66.9
2218 Male, age 76, both hemispheres 53.6
1942 Male, age 51, unknown 52.8
1915 Female, age 42, unknown 51.4
2021 Male, age 53, unknown 47.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 83.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 83.0
Samples: 139

Max nTPM: 211.6
Min nTPM: 26.6
Std nTPM: 26.5
Median nTPM: 80.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 211.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 196.3
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 142.5
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 132.8
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 129.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 126.9
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 126.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 121.2
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 120.9
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 120.9
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 118.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 130.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 130.4
FF:10158-103A5 76 years, female 130.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 27.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 27.2
Samples: 4

Max nTPM: 28.2
Min nTPM: 25.7
Sample A Male 28.2
Sample B Male 25.7
Sample C Female 28.1
Sample D Female 26.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.8
1735 Antisense, RP_040507_02_H04, Mouse strain C57BL/6J (56 days, male) 4.1
77371857 Antisense, RP_070129_01_B10, Mouse strain C57BL/6J (56 days, male) 1.4
1734 Antisense, RP_040507_02_H04, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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