BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:56.1 nTPM
HPA:56.1 nTPM
GTEx:49.9 nTPM
FANTOM5:72.0 Scaled Tags Per Million
Pig:16.7 nTPM
Mouse:112.9 nTPM
Allen mouse:0.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 56.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 54.6
2288 Male, age 75, left hemisphere 56.1
2481 Female, age 94, left hemisphere 55.9
2846 Female, age 79, unknown 55.5
1854 Male, age 80, left hemisphere 54.9
1857 Female, age 85, left hemisphere 54.8
2290 Female, age 72, unknown 54.3
1781 Male, age 74, unknown 53.2
2289 Male, age 61, right hemisphere 52.4
Claustrum
nTPM: 52.9
2491 Male, age 75, both hemispheres 55.4
2198 Male, age 80, both hemispheres 53.8
2392 Female, age 94, both hemispheres 53.6
2196 Female, age 79, unknown 53.5
1956 Male, age 74, unknown 53.4
2292 Female, age 85, both hemispheres 52.0
2284 Female, age 91, both hemispheres 51.5
2568 Male, age 61, both hemispheres 51.3
2645 Female, age 72, unknown 51.3
Globus pallidus, externus
nTPM: 54.3
2772 Female, age 79, unknown 58.8
1996 Male, age 80, right hemisphere 56.3
2395 Male, age 75, both hemispheres 54.2
2646 Male, age 61, right hemisphere 52.5
2567 Female, age 72, unknown 49.9
Globus pallidus, internus
nTPM: 56.1
2287 Male, age 75, right hemisphere 59.4
2483 Female, age 94, right hemisphere 57.6
2778 Female, age 91, both hemispheres 57.5
2037 Male, age 80, right hemisphere 56.3
1818 Male, age 74, unknown 55.2
2111 Female, age 85, right hemisphere 54.7
2566 Female, age 72, unknown 52.0
Nucleus accumbens
nTPM: 54.4
1806 Female, age 85, left hemisphere 55.8
1856 Female, age 91, right hemisphere 55.5
2286 Male, age 75, left hemisphere 55.5
2391 Female, age 94, left hemisphere 54.9
1783 Male, age 74, unknown 54.4
2698 Female, age 72, unknown 54.3
2732 Male, age 80, right hemisphere 52.7
2824 Male, age 61, right hemisphere 51.9
Nucleus basalis of Meynert
nTPM: 53.6
2484 Female, age 94, left hemisphere 54.4
2393 Male, age 80, right hemisphere 54.3
2821 Male, age 75, both hemispheres 53.9
2569 Male, age 61, both hemispheres 51.9
Nucleus of the diagonal band
nTPM: 54.1
1812 Female, age 91, both hemispheres 57.2
2775 Male, age 80, right hemisphere 56.1
2195 Female, age 85, both hemispheres 53.3
1979 Male, age 74, unknown 52.9
2029 Male, age 61, right hemisphere 51.1
Olfactory tubercle
nTPM: 54.0
1846 Male, age 80, right hemisphere 57.0
1998 Female, age 91, both hemispheres 53.3
2487 Female, age 94, left hemisphere 52.9
2856 Male, age 75, right hemisphere 52.7
Putamen
nTPM: 53.3
2466 Female, age 79, unknown 55.5
2482 Female, age 94, left hemisphere 54.8
1937 Female, age 91, right hemisphere 53.1
1838 Male, age 80, right hemisphere 53.0
2489 Female, age 72, unknown 52.8
2647 Male, age 75, left hemisphere 52.0
1829 Male, age 74, unknown 51.8
Septal nuclei
nTPM: 54.0
2009 Female, age 91, both hemispheres 56.2
2629 Female, age 94, right hemisphere 54.8
1960 Male, age 74, unknown 54.4
2394 Male, age 61, left hemisphere 53.8
2031 Female, age 72, unknown 53.6
2199 Male, age 80, right hemisphere 53.1
2059 Female, age 85, both hemispheres 52.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 49.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 46.6
Samples: 246

Max nTPM: 125.1
Min nTPM: 26.0
Std nTPM: 13.6
Median nTPM: 43.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 125.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 99.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 97.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 92.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 88.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 84.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 83.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 80.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 80.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 78.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 75.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 47.3
Samples: 246

Max nTPM: 147.1
Min nTPM: 22.1
Std nTPM: 15.6
Median nTPM: 45.0
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 147.1
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 131.2
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 123.8
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 103.2
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 100.6
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 90.7
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 81.5
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 80.4
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 78.2
GTEX-1I1GS-0011-R6b-SM-CMKHE 60-69 years, male 71.8
GTEX-1N2DW-0011-R6a-SM-EZ6MW 50-59 years, male 70.7
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Brain - Putamen (basal ganglia)
Average nTPM: 49.9
Samples: 205

Max nTPM: 119.3
Min nTPM: 26.3
Std nTPM: 12.8
Median nTPM: 47.7
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 119.3
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 93.5
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 83.6
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 81.9
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 79.8
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 77.5
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 76.5
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 75.6
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 75.0
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 73.9
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 72.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 72.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 64.4
FF:10164-103B2 76 years, female 64.4
Globus pallidus
Scaled Tags Per Million: 72.0
FF:10175-103C4 60 years, female 78.9
FF:10161-103A8 76 years, female 65.2
Nucleus accumbens
Scaled Tags Per Million: 47.2
FF:10037-101F1 23-56 years, mixed 47.2
Putamen
Scaled Tags Per Million: 61.1
FF:10176-103C5 60 years, female 61.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 16.7
Pig sample Sample description nTPM
Caudate
nTPM: 11.7
Samples: 4

Max nTPM: 14.0
Min nTPM: 9.4
Sample A Female 14.0
Sample B Female 9.4
Sample C Male 12.7
Sample D Male 10.5
Putamen
nTPM: 16.7
Samples: 4

Max nTPM: 21.1
Min nTPM: 12.8
Sample A Female 17.0
Sample B Female 12.8
Sample C Male 21.1
Sample D Male 15.8
Septum
nTPM: 14.1
Samples: 4

Max nTPM: 15.3
Min nTPM: 12.4
Sample A Female 15.3
Sample B Female 12.4
Sample C Male 14.8
Sample D Male 14.0
Ventral pallidum
nTPM: 13.2
Samples: 4

Max nTPM: 13.7
Min nTPM: 12.4
Sample A Female 13.7
Sample B Female 13.5
Sample C Male 13.3
Sample D Male 12.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 112.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 105.8
Samples: 4

Max nTPM: 118.4
Min nTPM: 95.2
Sample A Male 95.2
Sample B Male 118.4
Sample C Female 103.0
Sample D Female 106.7
Septum
nTPM: 113.0
Samples: 4

Max nTPM: 128.4
Min nTPM: 99.7
Sample A Male 99.7
Sample B Male 128.4
Sample C Female 105.8
Sample D Female 117.9
Ventral forebrain
nTPM: 94.9
Samples: 4

Max nTPM: 102.7
Min nTPM: 88.6
Sample A Male 91.4
Sample B Male 88.6
Sample C Female 102.7
Sample D Female 96.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
70609184 Antisense, RP_050412_02_H06, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
70609184 Antisense, RP_050412_02_H06, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

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