MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:153.1 nTPM
HPA:153.1 nTPM
GTEx:91.0 nTPM
FANTOM5:69.3 Scaled Tags Per Million
Pig:180.7 nTPM
Mouse:169.6 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 153.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 110.7
1827 Male, age 72, unknown 138.6
2219 Male, age 76, both hemispheres 135.2
2666 Male, age 74, left hemisphere 128.8
2828 Female, age 72, unknown 113.2
2411 Female, age 72, unknown 110.1
1870 Female, age 42, unknown 108.7
1833 Male, age 53, unknown 101.0
1830 Male, age 51, unknown 96.0
2586 Male, age 75, left hemisphere 88.6
2019 Male, age 18, unknown 86.6
Dorsal raphe nucleus
nTPM: 110.6
2298 Female, age 72, unknown 129.5
2750 Male, age 76, both hemispheres 118.2
2047 Male, age 72, unknown 109.5
1828 Male, age 53, unknown 98.2
2016 Female, age 72, unknown 97.5
Inferior colliculus
nTPM: 115.1
2097 Female, age 72, unknown 132.8
2849 Male, age 72, unknown 118.5
1848 Female, age 42, unknown 107.4
1890 Male, age 53, unknown 101.9
Median raphe nucleus
nTPM: 153.1
2220 Male, age 76, midline 153.1
Pedunculopontine tegmental nucleus
nTPM: 134.1
1921 Female, age 85, both hemispheres 144.0
2334 Male, age 80, both hemispheres 138.3
2338 Male, age 61, both hemispheres 119.9
Periaquaductal grey, anterior
nTPM: 126.3
1795 Male, age 51, unknown 137.1
1947 Male, age 18, unknown 121.4
2502 Female, age 75, unknown 120.2
Periaquaductal grey, dorsal
nTPM: 114.6
2850 Male, age 76, both hemispheres 130.9
1840 Male, age 53, unknown 121.2
1831 Male, age 72, unknown 103.9
2464 Female, age 72, unknown 102.3
Periaquaductal grey, lateral
nTPM: 118.8
2272 Male, age 74, both hemispheres 123.6
2140 Male, age 76, both hemispheres 122.2
2053 Male, age 18, unknown 110.6
Pretectal area
nTPM: 123.2
1816 Male, age 51, unknown 152.9
2224 Female, age 72, unknown 144.8
1944 Female, age 72, unknown 134.7
1815 Male, age 53, unknown 129.7
1817 Female, age 42, unknown 128.4
2007 Male, age 72, unknown 125.1
2825 Male, age 18, unknown 117.6
2273 Male, age 74, both hemispheres 109.0
2667 Female, age 75, unknown 106.1
2316 Male, age 76, right hemisphere 105.8
2407 Male, age 75, both hemispheres 101.4
Red nucleus
nTPM: 79.2
2584 Male, age 75, left hemisphere 97.6
2785 Male, age 18, unknown 94.5
2725 Female, age 75, unknown 92.9
2227 Male, age 72, unknown 78.3
2769 Male, age 72, unknown 76.7
2588 Male, age 74, left hemisphere 75.9
1954 Female, age 42, unknown 74.5
2503 Female, age 72, unknown 73.8
1821 Female, age 72, unknown 73.7
1865 Male, age 51, unknown 71.3
2823 Male, age 76, right hemisphere 70.9
1904 Male, age 53, unknown 70.6
Substantia nigra
nTPM: 114.6
1916 Female, age 42, unknown 142.8
1941 Male, age 53, unknown 134.5
2665 Male, age 74, both hemispheres 131.1
1889 Female, age 72, unknown 120.3
1851 Male, age 51, unknown 116.7
2699 Male, age 18, unknown 110.4
2241 Male, age 72, unknown 108.3
2409 Female, age 72, unknown 101.6
2590 Female, age 75, unknown 96.4
2583 Male, age 75, right hemisphere 83.7
Superior colliculus
nTPM: 112.9
1796 Male, age 53, unknown 142.7
2261 Male, age 18, unknown 127.5
2668 Female, age 75, unknown 121.1
2087 Female, age 72, unknown 119.3
1839 Male, age 51, unknown 111.1
1895 Male, age 76, right hemisphere 109.2
1913 Female, age 42, unknown 103.3
2587 Male, age 74, left hemisphere 100.8
2664 Male, age 75, both hemispheres 97.9
1995 Male, age 72, unknown 95.8
Ventral tegmental area
nTPM: 120.8
2218 Male, age 76, both hemispheres 155.4
1915 Female, age 42, unknown 124.6
1942 Male, age 51, unknown 116.6
2021 Male, age 53, unknown 115.2
2223 Female, age 72, unknown 109.0
2410 Female, age 72, unknown 104.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 91.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 91.0
Samples: 139

Max nTPM: 318.4
Min nTPM: 10.3
Std nTPM: 68.8
Median nTPM: 70.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 318.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 305.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 280.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 276.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 254.9
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 254.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 234.1
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 226.8
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 221.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 217.5
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 211.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 69.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 69.3
FF:10158-103A5 76 years, female 69.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 180.7
Pig sample Sample description nTPM
Midbrain
nTPM: 143.2
Samples: 4

Max nTPM: 179.0
Min nTPM: 71.0
Sample A Female 71.0
Sample B Female 145.6
Sample C Male 179.0
Sample D Male 177.3
Periaqueductal gray
nTPM: 138.8
Samples: 3

Max nTPM: 186.5
Min nTPM: 112.9
Sample B Female 112.9
Sample C Male 186.5
Sample D Male 116.9
Substantia nigra
nTPM: 180.8
Samples: 4

Max nTPM: 280.5
Min nTPM: 60.3
Sample A Female 242.9
Sample B Female 139.3
Sample C Male 280.5
Sample D Male 60.3
Superior colliculi
nTPM: 127.2
Samples: 4

Max nTPM: 150.5
Min nTPM: 62.0
Sample A Female 150.5
Sample B Female 62.0
Sample C Male 146.6
Sample D Male 149.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 169.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 169.6
Samples: 4

Max nTPM: 174.4
Min nTPM: 162.6
Sample A Male 174.4
Sample B Male 171.8
Sample C Female 169.4
Sample D Female 162.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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