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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:235.9 nTPM
HPA:235.9 nTPM
GTEx:218.5 nTPM
FANTOM5:870.7 Scaled Tags Per Million
Pig:202.4 nTPM
Mouse:332.2 nTPM

AMYGDALA - HPA Brain RNA-seq
Max nTPM 235.9
Sample id Sample description nTPM
Amygdala
nTPM: 129.0
1987 Female, age 91, left hemisphere 157.1
2517 Female, age 94, left hemisphere 145.0
2814 Male, age 76, right hemisphere 132.6
2514 Male, age 75, right hemisphere 121.2
2695 Female, age 67, right hemisphere 89.0
Basal amygdala
nTPM: 159.3
2243 Female, age 91, right hemisphere 218.9
2685 Female, age 94, left hemisphere 172.5
1955 Male, age 76, both hemispheres 151.2
2110 Male, age 80, left hemisphere 151.2
2827 Female, age 67, right hemisphere 151.2
2609 Male, age 75, right hemisphere 110.9
Central amygdala
nTPM: 151.9
2239 Male, age 80, left hemisphere 194.6
2826 Female, age 94, left hemisphere 184.0
2701 Female, age 91, right hemisphere 149.7
1905 Male, age 76, both hemispheres 131.0
2515 Male, age 75, right hemisphere 100.3
Corticomedial amygdala
nTPM: 184.7
2535 Female, age 67, right hemisphere 253.2
2242 Female, age 91, right hemisphere 234.4
2429 Female, age 94, left hemisphere 184.5
2829 Male, age 80, left hemisphere 178.1
2240 Male, age 76, both hemispheres 148.8
2428 Male, age 75, right hemisphere 109.2
Lateral amygdala
nTPM: 148.2
2534 Female, age 94, left hemisphere 248.7
2256 Male, age 80, left hemisphere 151.9
1883 Male, age 76, both hemispheres 149.1
2255 Female, age 91, right hemisphere 145.7
2830 Female, age 67, right hemisphere 98.1
2516 Male, age 75, right hemisphere 95.5
Stria terminalis, bed nucleus
nTPM: 235.9
1974 Female, age 91, both hemispheres 298.3
2486 Female, age 94, both hemispheres 251.6
2201 Male, age 74, unknown 157.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 218.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 218.5
Samples: 152

Max nTPM: 660.9
Min nTPM: 30.1
Std nTPM: 119.8
Median nTPM: 191.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 660.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 553.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 546.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 536.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 500.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 490.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 482.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 442.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 432.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 431.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 416.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 406.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 405.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 395.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 392.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 391.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 380.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 365.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 354.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 342.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 341.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 341.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 339.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 336.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 333.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 330.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 330.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 329.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 326.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 325.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 323.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 319.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 313.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 301.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 299.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 294.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 290.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 290.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 286.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 282.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 279.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 277.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 276.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 271.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 271.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 269.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 268.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 255.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 253.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 250.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 248.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 246.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 246.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 245.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 243.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 242.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 240.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 236.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 233.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 232.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 232.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 230.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 229.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 222.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 217.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 214.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 210.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 205.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 204.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 201.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 201.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 200.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 197.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 194.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 193.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 193.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 190.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 185.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 182.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 182.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 178.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 177.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 177.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 177.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 175.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 174.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 173.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 172.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 172.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 169.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 167.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 167.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 166.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 163.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 161.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 160.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 158.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 157.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 154.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 149.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 141.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 141.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 141.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 139.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 137.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 136.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 136.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 135.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 135.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 133.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 133.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 133.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 131.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 130.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 129.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 127.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 126.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 120.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 120.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 117.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 116.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 115.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 114.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 112.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 110.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 108.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 107.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 107.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 106.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 106.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 101.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 101.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 98.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 96.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 93.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 92.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 91.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 89.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 85.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 84.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 82.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 79.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 71.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 71.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 70.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 68.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 66.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 54.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 52.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 40.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 39.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 30.1
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 870.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 870.7
FF:10151-102I7 76 years, female 870.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 202.4
Pig sample Sample description nTPM
Amygdala
nTPM: 202.4
Samples: 4

Max nTPM: 326.4
Min nTPM: 130.8
Sample A Female 326.4
Sample B Female 130.8
Sample C Male 174.9
Sample D Male 177.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 332.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 332.3
Samples: 4

Max nTPM: 380.3
Min nTPM: 309.8
Sample A Male 319.8
Sample B Male 319.1
Sample C Female 380.3
Sample D Female 309.8

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